ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAAATTCTACAAAGGCTGAGCTTATTCAGAAGTAAGCCTCTGAGATG
ACAATTACAGCTGGCAAAGGAAAGGACTGGACTCTTGGTTATCATCAGTT
TGCTTTTTAAAAGGTGTGTGTGTGTGTGTGTGTGTGGCATTATTTGGAGG
TGTGGCCTTGTTGGAATATCCTTTGAGTCACAACAGAAATAAAAACTGGA
GACATGAATGACAGCAATGCCCTTAATCAGATAATTATAAGATATTTACA
AATTGTCATTGCTTAAGCAGATATCTATATATGGAAACAAAATCTTATAA
GACTATAACAGACAGTAGCAGACTTGGTATCGATTTTTCTCTTTTATTAA
AACATATATGAAAATTTGTACATATTAAAACTTTCCTAAATAACCTACCA
AATTATAGCCATTAAGGCAAATTTGTTATTTGTGCATGTGCAGGATCAAG
TGCACATGGTTGACAATCTTGGCTGCTAGGCCCTATATGCTGTCCACATT
GTTTTGACTGTTTCCTTTTAAAATCAGTTGTTACATTTATTTATTTATTT
ATTCATTCATTTCTTTCCTTTAATTAATTATTTATTTATGTGCCTGGGCG
CTCTGAATCTAAGTATTTTTGTTCCCCAGCACAATTTGCCCCTCCCCTAT
ATACCTTACCTTCCGCCCGTTTCTACCCCGTCTTTTTCCTTAATCCTTAC
CATTCG

ATATAATGGTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTGAAGGAAACTATTCCTACTGGAATCATC
ACATTAAATTATTAAACATTACTTCTTTCTAAATTTGCTACCATATACCC
ANCTAGTATGATAAATGAGNGGCTATTTTCATAAACCCTANAGATAACNN
ATTATAGCAATGAGAAAAGCTAGACGGGTCTTTGCGTCTATCAAACGAAA
ACGATCCGGCGGTTGGCTTCAAGCCCGGAAAAGTAAAAACAAAAAGTTTT
TTTTTTTTTTCCCCCCCGCCCCCCGGGNCCCCCCNNGGNNNNNNNNNNNN
NCCNNNNNNNNCCNNNTTTTNNNNNNNNNNNNNNCCCCCCCCTAAGAATA
GGTCCCCNGGGGAGGGGAAGCCTGGAGGAGGGGAGGAGCTGGGGGGGGAA
GGGGGGAGGGGGCGGGGGGGAGGGGGGGGCTGGGGGGGGGGGGGCTGGGG
GGAGGGGGCGGGGGGGGGGGGGGGGGGGGGGGCTTNNNNNNNNNNNNNNN
NNNNNNANGAGTGAGTTGGCTGGGGGGGGGGGGCTGGGGGGGGGGGGGGG
GGGGGGGGGGGCTGGGGNNTTCTNAAAAAAAAAAANAAANAAAAAAAANN
NNNNNNCCTTNNNNNNNNNNNNNNNNAAACCACCANNCAACATCTACNCN
TTNNNTNTTTTNNNTTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
NNTNNNANNTAAATNTG

Query= MSMg01no357_m13.b1 MSMg01no357_m13.b1 CHROMAT_FILE:
MSMg01no357_m13.b1 PHD_FILE: MSMg01no357_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:52 2005
         (449 letters)



>mm_chr12_15444065_15444913
          Length = 849

 Score =  837 bits (433), Expect = 0.0
 Identities = 449/461 (97%), Gaps = 12/461 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggctgagcttattcagaagtaagcctctgagatgacaattacagctggcaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caaaggctgagcttattcagaagtaagcctctgagatgacaattacagctggcaaaggaa 248

                                                                       
Query: 61  aggactggactcttggttatcatcagtttgctttttaaaaggtgtgtgtgtgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aggactggactcttggttatcatcagtttgctttttaaaaggtgtgtgtgtgtgtgtgtg 308

                                                                       
Query: 121 tgtg--------gcattatttggaggtgtgg----ccttgttggaatatcctttgagtca 168
           ||||        |||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 309 tgtgtgtgtgtggcattatttggaggtgtgggtggccttgttggaatatcctttgagtca 368

                                                                       
Query: 169 caacagaaataaaaactggagacatgaatgacagcaatgcccttaatcagataattataa 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caacagaaataaaaactggagacatgaatgacagcaatgcccttaatcagataattataa 428

                                                                       
Query: 229 gatatttacaaattgtcattgcttaagcagatatctatatatggaaacaaaatcttataa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gatatttacaaattgtcattgcttaagcagatatctatatatggaaacaaaatcttataa 488

                                                                       
Query: 289 gactataacagacagtagcagacttggtatcgatttttctcttttattaaaacatatatg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gactataacagacagtagcagacttggtatcgatttttctcttttattaaaacatatatg 548

                                                                       
Query: 349 aaaatttgtacatattaaaactttcctaaataacctaccaaattatagccattaaggcaa 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaatttgtacatattaaaactttcctaaataacctaccaaattatagccattaaggcaa 608

                                                    
Query: 409 atttgttatttgtgcatgtgcaggatcaagtgcacatggtt 449
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atttgttatttgtgcatgtgcaggatcaagtgcacatggtt 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)