Query= MSMg01no358_d12.b1 MSMg01no358_d12.b1 CHROMAT_FILE:
MSMg01no358_d12.b1 PHD_FILE: MSMg01no358_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:26 2005
(519 letters)
>mm_chr12_118346757_118347678
Length = 922
Score = 891 bits (461), Expect = 0.0
Identities = 507/527 (96%), Gaps = 13/527 (2%)
Strand = Plus / Plus
Query: 4 ggaattcactactcaatcccgaaactactgtattctttccctgaactagtctgtggggcc 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattcactactcaagccagaaactactgtattctttccctgaactagtctgtggggcc 257
Query: 64 acttgtcacagccactactggtgaacacacacacacacacacacaca-------a-acac 115
||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 258 acttgtcacagccactactggtgaacacacacacacacacacacacacacacacacacac 317
Query: 116 acggatggaaagataatgcaataaccatgaaccacaacaccctgtctactcaccttagaa 175
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ac--acggaaagataatgcaataaccatgaaccacaacaccctgtctactcaccttagaa 375
Query: 176 caccatgactgaaggaa-gc-cccca-ccccactcttctgctgacctccatccaatttac 232
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 376 caccatgactgaaggaaggctccccacccccactcttctgctgacctccatccaatttac 435
Query: 233 ctcatggagacacagtttccttctaagcaaatagatacattcatacacctatcatgtcag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcatggagacacagtttccttctaagcaaatagatacattcatacacctatcatgtcag 495
Query: 293 aggttgctgtggggatctttccacccacgtgtatctgtaaacatcctggagctacataag 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggttactgtggggatctttccacccacgtgtatctgtaaacatcctggagctacataag 555
Query: 353 gtacacaggccatatgtgaggtggaggcagagaggtattgttagagacactaggctccct 412
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 556 gtacacaggccatatgtgaggtggaggcagagaggtattgtcagagacactaggatccct 615
Query: 413 gccccatagtgataggaaagcacagaaaatcacacagaatgccctgtctacacagagctg 472
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 616 gccccatagtgataggaaagcacagaaaatcacactgaatgccctgtctacacagagctg 675
Query: 473 ccaggatttgaatcccaagggatgtttcaatggctgacttatattca 519
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccaggatttgaatcccaagggatgtttcaatggctgacttatattca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 922
Length adjustment: 10
Effective length of query: 509
Effective length of database: 912
Effective search space: 464208
Effective search space used: 464208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_d12.g1 MSMg01no358_d12.g1 CHROMAT_FILE:
MSMg01no358_d12.g1 PHD_FILE: MSMg01no358_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:26 2005
(517 letters)
>mm_chr12_118525766_118526684
Length = 919
Score = 714 bits (369), Expect = 0.0
Identities = 448/501 (89%), Gaps = 44/501 (8%)
Strand = Plus / Minus
Query: 1 caaccatcatgtgactaggtttgttaaaaaggtagtttggtgcaaataagctttggcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caaccatcatgtgactaggtttgttaaaaaggtagtttggtgcaaataagctttggcaga 469
Query: 61 agcagcctctgtgtagggaaaagctacttccagcctcttgataaatgagacaca--tatt 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 468 agcagcctctgtgtagggaaaagctacttccagcctcttgataaatgagacacatttatt 409
Query: 119 actaaatagctattgcaatgatctcaggaaagaagccaggggtgggaacccatccaggag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 actaaatagctattgcaatgatctcaggaaagaagccaggggtgggaacccatccaggag 349
Query: 179 ggtgatagtctgaattagaaatgatgtgttgcagacttcgtagttccttcctgaaggaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggtgatagtctgaattagaaatgatgtgttgcagacttcgtagttccttcctgaaggaag 289
Query: 239 gcatggtcctcacacacagcacaggcttcgggagctagatccttgagcagcctcactgtg 298
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gcatggccctaacacacagcacaggcttcgggagctagatccttgagcagcctcactgtg 229
Query: 299 gctctggatgctctttcttttctttcttttccttccttccttccttccttccttccttcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gctctggatgctctttcttttctttcttttccttccttccttccttccttccttccttcc 169
Query: 359 ttccttccttccttccttccttccttccttccttccttcctccctccctccctccctctc 418
| ||||||||||||| |||||
Sbjct: 168 t----------------------------------------ccctccctccctctctctc 149
Query: 419 tttctttctt-ctttctttttctttttctttctttctttctttctttcttccttccttcc 477
|||||| ||| ||||||||||||||| ||| ||| ||| ||| ||| |||||||||||||
Sbjct: 148 tttctt-ctttctttctttttcttttccttccttccttccttccttccttccttccttcc 90
Query: 478 ttccttccttccttccttcct 498
|||||||||||||||||||||
Sbjct: 89 ttccttccttccttccttcct 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 47
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
