Query= MSMg01no358_o02.b1 MSMg01no358_o02.b1 CHROMAT_FILE:
MSMg01no358_o02.b1 PHD_FILE: MSMg01no358_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
(491 letters)
>mm_chr12_42821799_42822689
Length = 891
Score = 673 bits (348), Expect = 0.0
Identities = 354/356 (99%)
Strand = Plus / Minus
Query: 1 ttgacagagtcttacaaattttcccttttcaccactgatcacattaatttcaacaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgacagagtcttacaaattttcccttttcaccactgatcacattaatttcaacaaatga 297
Query: 61 tatacttaatttcatatggtaattttgtttaaaagggagatttgtgttaactgaggttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tatacttaatttcatatggtaattttgtttaaaagggagatttgtgttaactgaggttat 237
Query: 121 aatggacattttacattatttcctcgacatgattggtttattttaaaactattttaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aatggacattttacattatttcctcgacatgattggtttattttaaaactattttaatta 177
Query: 181 taaaatacacatgagaaatttatttatttttatatttggttacttacttgtctttgtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 taaaatacacatgagaaatttatttatttttatatttggttacttacttgtctttgtcct 117
Query: 241 tttttgtaagacagggtctcatgtaagtcatatagaagagccttcagtgtctgatcctcc 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 116 tttttgtaagacagggtctcatgtaggtcatatagaagagccttcagtgtctgatcctcc 57
Query: 301 tgcttcggcctccctaatgttgctgccatgactggtgagacacttttccttctaat 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 56 tgcttcggcctccctaatgttgctgccatgactggtgagacccttttccttctaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_o02.g1 MSMg01no358_o02.g1 CHROMAT_FILE:
MSMg01no358_o02.g1 PHD_FILE: MSMg01no358_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
(500 letters)
>mm_chr12_42245247_42246146
Length = 900
Score = 924 bits (478), Expect = 0.0
Identities = 493/500 (98%), Gaps = 4/500 (0%)
Strand = Plus / Plus
Query: 1 ctctgagaggtctgcctgggggctttgcctcacagaagagcctgcaggcttgcaatacat 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctctgagagg----cctgggggctttgcctcacagaagagcctgcaggcttgcaatacat 260
Query: 61 ttggaggcccacgtgagaagaggcacagaagaaagtgagaaccaaggaggaagggagtat 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ttggaggcccacgtgagaagaggcacagaagaaagtgagagccaaggaggaagggagtat 320
Query: 121 ccctctcccctctgcctacagccctctgcttagatcacttgctgtcatctccgttctagc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ccctctcccctctgcctacagccctctgcttagatcacttgctgtcatctccattctagc 380
Query: 181 tttctccttcgcagctctcaaagaccctcctatcccagcttcccacagactgtctgagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctccttcgcagctctcaaagaccctcctatcccagcttcccacagactgtctgagac 440
Query: 241 aaatatcctcagtgcttacatagagaagactgcatcattcactctgtgggtgtttcctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatatcctcagtgcttacatagagaagactgcatcattcactctgtgggtgtttcctga 500
Query: 301 cctttactgactcattggccagttttcagtagctcacaaggatctctaagccaggcagct 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 cctttactgactcattggccagttttcagtagctcacgaggatctctaagccaggcagct 560
Query: 361 tagtgtgcatgctctgaattggatctctcgatttaacccactgtctgccgtgttctccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgtgcatgctctgaattggatctctcgatttaacccactgtctgccgtgttctccac 620
Query: 421 tgaaatcatattttgttttagaagctatccaactggccagttattgtacaaaactccttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaatcatattttgttttagaagctatccaactggccagttattgtacaaaactccttc 680
Query: 481 ccttcctgggagattacaac 500
||||||||||||||||||||
Sbjct: 681 ccttcctgggagattacaac 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
