BAC Information

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BAC

Clone NameMSMg01-359A23
Chromosome12 (Build37)
Map Location 97,177,415 - 97,351,539
singlet/doubletdoublet
Overlap gene1700019M22Rik
Upstream geneLOC100039603, LOC667688, Flrt2
Downstream geneLOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A23.T7 (MSMg01no359_a23.b1)MSMg01-359A23.TJ (MSMg01no359_a23.g1)
ACCAG468566AG468567
length759758
length of high quality
(start - end)		462 (52 - 513)386 (57 - 442)
definitionCHROMAT_FILE: MSMg01no359_a23.b1 PHD_FILE: MSMg01no359_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:29 2005CHROMAT_FILE: MSMg01no359_a23.g1 PHD_FILE: MSMg01no359_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,177,415 - 97,177,876)(97,351,156 - 97,351,539)
sequence
TATACGACTCACTATTTCGAGAGGAGGGGNNGGAATNANTCTGTTTCCCA
GGCTGACCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCATGTGCTGG
GATTAAAGGCGTGTGTCCTCACTGTCCAGCTAACATAAATATTTTAAATT
ATATTGGACACTGGAGATGGGTTGTATAATTTTAAACTGGAAAGCTATTT
AAAAATTTTAGATAGTGGTATTTTATTATGGAGTAAGTCACCAGTTATGC
TGTTAGAAAAGTCCATGTCCTTGGGAATGCCGTGTGGATATCAGACCAGG
ATATGTTTCCCCAAATTCAAGACAGTGTTCAAAATCTGTTGTACTAACTG
AGAAGTTTGTGAAATGTGTGAAATAAGGACAACTGCTGAGAAAACATCCA
CAATTAGAGTTTAATTACTGAAAGTTTTAATTGTTCAGACATTTCTTAAA
CATCATTGTCTCACTGTCAATAATAGCCCTGGTTATCAATAGTGGATACT
TGAAGTTTGAAGTGCTTCTGTGTATGTTATTTCAAGAAGGGATGATTGCC
TTTAGGAATACAAAAAAAGTTTGTTTTTGCATCTGCAGGAGGCTACCTTA
AGCCGTTGAAATGAAAAGAATTTTCCTGCACCCACAATCATTTGTGGTTT
TGGCTTGGATTTTTGTACCCAAAAAAAAACCAAACTTCCCCCCGGTTGGC
TGTTGGTAAAACAACCGGTGGCCCCCCGGGGATTCTGGTAATTTTTGGGG
GAAAAGTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTTAAGGTGGTATTTAACGTTGATCAACTTTTGAGCTCATTCA
ATGTGGGCTCAATGTTTAGATAGTTAAACTATCACCACCTGAGCTCTCTG
AAAGGAATTCATCTTGAAAAATGTTTTAAATCTTTAATTTTTGAGATAAC
CACAAAGGTTAAATAAGTAGCATGATAAAAATATTAAGTATAGTTCCTGT
CACATGAGCTTAAAATGTTTTATTTTTATTTTGAGTGAGGTAAGAGATGA
AATAGACAGTTATGGGTGACTTTGATGTACAATTATATTCTTTCTGCATT
CCAATAGATCACCATGTATAAAGAATCCTATGTGAGGCATTCTTGATTTA
GATATCATGAACTCTTTTAACTGCCTCTTCTATGGAATTCCCTGAGATAT
CCCATTTTTGGAATCAGTGTTCCAAAGTCTGTATTGCTCAGTTTAAAGTG
GGGCAGCGGGTCTTCATTATTCTCCCCCCTGTTTTAGAAGAAANCCTCTA
CAAGATGGCCCGACCCAAAACTGATCTACTTTCCTAATTGAATCTCACCA
TTTTGTTTTTCCTTTCCCACCACCCTTCCCTTTTCACCCTTTGTTTTTTT
TACAAATTATGACAACTCCCATTCCTTAACTTTCTCTCTTCACTTTTGCA
TGCAAAAAATCCCCTTTCCCCCCTTTTCTCCACCCCATTACCCCTTTTCC
CCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a23.b1 MSMg01no359_a23.b1 CHROMAT_FILE:
MSMg01no359_a23.b1 PHD_FILE: MSMg01no359_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (462 letters)



>mm_chr12_97177215_97178076
          Length = 862

 Score =  816 bits (422), Expect = 0.0
 Identities = 452/462 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgacctcaaactcagaaatctgcctgcctctgcctcccatgtgctgggattaaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgacctcaaactcagaaatctgcctgcctctgcctcccatgtgctgggattaaaggcg 260

                                                                       
Query: 61  tgtgtcctcactgtccagctaacataaatattttaaattatattggacactggagatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtcctcactgtccagctaacataaatattttaaattatattggacactggagatggg 320

                                                                       
Query: 121 ttgtataattttaaactggaaagctatttaaaaattttagatagtggtattttattatgg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  
Sbjct: 321 ttgtataattttaaactggaaagctatttaaaagttttagatagtggtattttattataa 380

                                                                       
Query: 181 agtaagtcaccagttatgctgttagaaaagtccatgtccttgggaatgccgtgtggatat 240
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 381 agtaagtcaccagttatgctgttagcaaagtccatgtccttgggaatgccatgtggatat 440

                                                                       
Query: 241 cagaccaggatatgtttccccaaattcaagacagtgttcaaaatctgttgtactaactga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||
Sbjct: 441 cagaccaggatatgtttccccaaattcaagacagtgttcaaaatctgttacactgactga 500

                                                                       
Query: 301 gaagtttgtgaaatgtgtgaaataaggacaactgctgagaaaacatccacaattagagtt 360
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gaagtttgtgaaacgtgtgaaataaggacaactgctgagaaaacttccacaattagagtt 560

                                                                       
Query: 361 taattactgaaagttttaattgttcagacatttcttaaacatcattgtctcactgtcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattactgaaagttttaattgttcagacatttcttaaacatcattgtctcactgtcaat 620

                                                     
Query: 421 aatagccctggttatcaatagtggatacttgaagtttgaagt 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatagccctggttatcaatagtggatacttgaagtttgaagt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_a23.g1 MSMg01no359_a23.g1 CHROMAT_FILE:
MSMg01no359_a23.g1 PHD_FILE: MSMg01no359_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:29 2005
         (386 letters)



>mm_chr12_97350954_97351739
          Length = 786

 Score =  719 bits (372), Expect = 0.0
 Identities = 381/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttaaggtggtatttaacgttgatcaacttttgagctcattcaatgtgggctcaatgttta 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttaaggtggtatttaacgttgatcaacttttgagctcattcaatgtgggctcaatgttta 527

                                                                       
Query: 63  gatagttaaactatcaccacctgagctctctgaaaggaattcatcttgaaaaatgtttta 122
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatagttaaactatcaccacatgagctctctgaaaggaattcatcttgaaaaatgtttta 467

                                                                       
Query: 123 aatctttaatttttgagataaccacaaaggttaaataagtagcatgataaaaatattaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aatctttaatttttgagataaccacaaaggttaaataagtagcatgataaaaatattaag 407

                                                                       
Query: 183 tatagttcctgtcacatgagcttaaaatgttttatttttattttgagtgaggtaagagat 242
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatacttcctgtcacatgagcttaaaatgttttatttttattttgagtgaggtaagagat 347

                                                                       
Query: 243 gaaatagacagttatgggtgactttgatgtacaattatattctttctgcattccaataga 302
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggaatagacagttatgggtgactttgatgtacaattatattctttctgcattccaataga 287

                                                                       
Query: 303 tcaccatgtataaagaatcctatgtgaggcattcttgatttagatatcatgaactctttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcaccatgtataaagaatcctatgtgaggcattcttgatttagatatcatgaactctttt 227

                                   
Query: 363 aactgcctcttctatggaattccc 386
           ||||||||||||||||||||||||
Sbjct: 226 aactgcctcttctatggaattccc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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