BAC Information

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BAC

Clone NameMSMg01-359F11
Chromosome12 (Build37)
Map Location 90,161,936 - 90,162,386
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream geneNrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F11.T7 (MSMg01no359_f11.b1)MSMg01-359F11.TJ (MSMg01no359_f11.g1)
ACCAG468778AG468779
length776772
length of high quality
(start - end)		455 (28 - 482)210 (57 - 266)
definitionCHROMAT_FILE: MSMg01no359_f11.b1 PHD_FILE: MSMg01no359_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:49 2005CHROMAT_FILE: MSMg01no359_f11.g1 PHD_FILE: MSMg01no359_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGGTTTACATC
ACAGGCATTAGTAAATACTGATGCCACCTCTATGGTCGTGGGCTCCTTGA
AAAGGAGGTGTCTAAAACTGATGGTCAGTCTTAAGACCCAGAAGACATTG
TCTAGTGTAAAGCTTTAAGATTTGAAGTTTCTCAAATATTAAACGAGGAA
AGTCCCAGTTTTCAAGTCCAAAGTGAAAGGGATCTTTTCATAGGGGAGGG
GGGAATCTTTTCAAGATGAGAGATCAGAGAGGAAGGTAGCTGTCAATAGA
TTGAGAGCAGGAGTAGAGAGGTAGAGAGGATGCTATGGCAACTCTCCAGG
AGTCGGGCAACATCAGGCAGCCACCTCAAAGCAGTTCCTACAAGAGCAAG
CCCTAGCATTATAGCAGCAGCCCACAAAACTATCCCTTGCTCGATAGAGT
CCTCTTTTTGAGATGACGAGATAATAACTCACCTGTATGGAGTAGCTTCC
TGAGACACAGATGAGTTTTAACTATGCCAAGAGTCACTAGAGATCTGAAA
ACTGGAGTATCCCCTTGTGAGTATGGGGCCCTTCCCTGTTACCCCTAAAT
TATAACTGTTTTGGAGATAACACTTTGTCCCAATGGGTGGCTTGGAACCT
TTTACTAAACCCACAAATAAATAACTCCCCCTTCCCTCTGTCCCATTTTT
TTTTTTCTCCCCTCTTTTTCTTTGGCTTTTATACACTCCCTATCACTCTC
CCCGTTTTTCTCCCCCCTTTTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTG
TCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCCTT
GAGTTTTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TTGACACTCTTAACCACAATCTGGTCTGACCTTCTCTATCCCTGTTGTTC
CCTTCTTCGCTTTATTTACCAGCATAATTTCCTTTCCCCTCTTCTACCCG
TTTTTACCATTTTTCTATTTCCTACCTCCTCTCCTTCTTCTTTTATTTCC
TCCCCCTTTTCCCTCTTTTTTTCTCTTCCCTTTCCTCCCCCCTTTTTTCT
CCCTATTTCTTTTTTCCCCTTTTTCCCCGTCCTTTTTTCCATCCTTTTTC
TCCCTTTTCTTTCTTTTACTTTCACTCCCCCCATTCCTCCTTTTATATAC
TTCTCTTCTTTCTCCCCTCTATTTTTTTTTCTTTTCATTTTCTTCTCCTT
CCCTCGCTCTATCTTTATTTCTTTTATTTCCCCTTTCCCCTTTCTCTTAT
TTTTTCCATATCCTCTTTCCCCCCTTTTTTCCTCCCTCACACCCCTCTAT
CCTTTCTCCTTCCTCTCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f11.b1 MSMg01no359_f11.b1 CHROMAT_FILE:
MSMg01no359_f11.b1 PHD_FILE: MSMg01no359_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:49 2005
         (455 letters)



>mm_chr12_90161732_90162586
          Length = 855

 Score =  826 bits (427), Expect = 0.0
 Identities = 445/451 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaggtttacatcacaggcattagtaaatactgatgccacctctatggtcgtgg 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaggtttacatcacaggcatttgtaaatactgatgccacctctatggtcgtgg 264

                                                                       
Query: 65  gctccttgaaaaggaggtgtctaaaactgatggtcagtcttaagacccagaagacattgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctccttgaaaaggaggtgtctaaaactgatggtcagtcttaagacccagaagacattgt 324

                                                                       
Query: 125 ctagtgtaaagctttaagatttgaagtttctcaaatattaaacgaggaaagtcccagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagtgtaaagctttaagatttgaagtttctcaaatattaaacgaggaaagtcccagttt 384

                                                                       
Query: 185 tcaagtccaaagtgaaagggatcttttcataggggaggggggaatcttttcaagatgaga 244
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 385 tcaagtccaaagtgaaagggatcttttcataggggaggtgggaatcttttcaagatgaaa 444

                                                                       
Query: 245 gatcagagaggaaggtagctgtcaatagattgagagcaggagtagagaggtagagaggat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gatcagagaggaaggtagctgtcaatagattgagagcaggagtagagaggtagagatgat 504

                                                                       
Query: 305 gctatggcaactctccaggagtcgggcaacatcaggcagccacctcaaagcagttcctac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctatggcaactctccaggagtcgggcaacatcaggcagccacctcaaagcagttcctac 564

                                                                       
Query: 365 aagagcaagccctagcattatagcagcagcccacaaaactatcccttgctcgatagagtc 424
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 565 aagagcaagccctagcattatagcagctgcccacaaaactatctcttgctcgatagagtc 624

                                          
Query: 425 ctctttttgagatgacgagataataactcac 455
           |||||||||||||||||||||||||||||||
Sbjct: 625 ctctttttgagatgacgagataataactcac 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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