Query= MSMg01no359_k04.b1 MSMg01no359_k04.b1 CHROMAT_FILE:
MSMg01no359_k04.b1 PHD_FILE: MSMg01no359_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:10 2005
(507 letters)
>mm_chr12_41836699_41837605
Length = 907
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Plus
Query: 5 gaattccaggacaatcttagaccaggacctggacatgctcttggaaagagaggggtggca 64
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagtcttagaccgggacctggacatgctcttggaaagagaggggtggca 264
Query: 65 atctctatgctagtgcttttcccatccctattgctctgctccaggtggttcttcatacag 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccctatgctagtgcttttcccatccctattgctctgctccaggtggttcttcatacag 324
Query: 125 atgttttgctggttgccgttagattatttcctcgctttccatatggaatgatgatttgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttttgctggttgccgttagattatttcctcgctttccatatggaatgatgatttgga 384
Query: 185 gtaggtcccatcagaatattatcctgggacaatcgagtcgctgtttgcatgagtttttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaggtcccatcagaatattatcctgggacaatcgagtcgctgtttgcatgagtttttat 444
Query: 245 tcttcatgtagctttatgtacctctttactagaatttagtgaagacttcatttcaagcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttcatgtagctttatgtacctctttactagaatttagtgaagacttcatttcaagcat 504
Query: 305 atatattttccttgcattagatattggtaacattattaatattattattttccatttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatattttccttgcattagatattggtaacattattaatattattattttccatttttt 564
Query: 365 tgaggaatcctagttagcctgtctgaaaactcatttgttcttgctttaaaattgtacagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaggaatcctagttagcctgtctgaaaactcatttgttcttgctttaaaattgtacagt 624
Query: 425 agtaggattttttttattgaattgttctcaagctatgaagtacactgcatcataaagact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtaggattttttttattgaattgttctcaagctatgaagtacactgcatcataaagact 684
Query: 485 gaaaaatattacaagtgataaat 507
|||||||||||||||||||||||
Sbjct: 685 gaaaaatattacaagtgataaat 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_k04.g1 MSMg01no359_k04.g1 CHROMAT_FILE:
MSMg01no359_k04.g1 PHD_FILE: MSMg01no359_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:10 2005
(515 letters)
>mm_chr12_42050029_42050941
Length = 913
Score = 669 bits (346), Expect = 0.0
Identities = 449/530 (84%), Gaps = 73/530 (13%)
Strand = Plus / Minus
Query: 1 caaaaatttgatgaataaaaatatcaacaaaagtattttgtggaggaattagaaaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caaaaatttgatgaataaaaatatcaacaaaagtattttgtggaggaattagaaaacact 639
Query: 61 gccttatgaaaatgagactgaaaatgtaagaatcacaagttatatgtttgaataatatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gccttatgaaaatgagactgaaaatgtaagaatcacaagttatatgtttgaataatat-- 581
Query: 121 gaacagcattttagtgctacttagtaccagcatccatatcataagcttgctaacaggaga 180
|||||||
Sbjct: 580 -----------------------------------------------------caggaga 574
Query: 181 caattcttctgaagtcagtattagatgaaatagctgaaatactagctattaaaatcccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caattcttctgaagtcagtattagatgaaatagctgaaatactagctattaaaatcccaa 514
Query: 241 atatgcttgactttcaataaataaaacctaatgaaattccaaggacagtaaacaagaagt 300
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 513 atatgctttactttcaataaataaaacctaatgaaattccaagtatagtaaacaagaagt 454
Query: 301 ttacatttttggacataatttcaaaatatgactcaactttgtacttggactttcaaatta 360
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 453 ttacatttttggacataatttcaaaatatga--caactttgtacttggactttcaaatta 396
Query: 361 aatactatgttaactctgcagctaaaatataaataaatttaaaacttatttggaaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 395 aatactatgttaactctgcagctaaaatataaataaatttaaaacttatttgggaaaatg 336
Query: 421 cagaacaagagactcacta----------------agtgcaatgtgagtgacgtcataat 464
||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 335 cagaacaagagactcactaagtagctagtagctttagtgcactgtgagtgacgtcataat 276
Query: 465 gggatcagtactatgaagccctgattacctggatcccgcaaccatggata 514
|||||||||||||| ||||||||| |||||||||||| ||||||||||||
Sbjct: 275 gggatcagtactataaagccctgactacctggatcccacaaccatggata 226
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 913
Length adjustment: 10
Effective length of query: 505
Effective length of database: 903
Effective search space: 456015
Effective search space used: 456015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
