BAC Information

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BAC

Clone NameMSMg01-360H24
Chromosome12 (Build37)
Map Location 97,447,787 - 97,448,107
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik
Downstream geneLOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H24.T7 (MSMg01no360_h24.b1)MSMg01-360H24.TJ (MSMg01no360_h24.g1)
ACCAG469659AG469660
length785785
length of high quality
(start - end)		453 (43 - 495)417 (71 - 487)
definitionCHROMAT_FILE: MSMg01no360_h24.b1 PHD_FILE: MSMg01no360_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:16 2005CHROMAT_FILE: MSMg01no360_h24.g1 PHD_FILE: MSMg01no360_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGTACTCCTTCCAAGCTTACATTTGATTATGTTGGAAATAGCACTTT
CAGTGGCTTAAGTTAAATTCCAGGGTGTCATGAGAAGGGTACCGTAATCC
CACAGGACTACTGTCCTCATAAGAAAGAGAAGAATCATCAGGGCTTCCTA
ACAGACAGTCCTTTAACAGAGATAAAAGGTCACATCAAGACACAGCAAGT
CAACAGGCTGTTGAAAAGCCTGAAGAATGGTCTCACCACAAACAAATGCT
GTTAAGACCTTCAGAATAAACTTTAAAACCCTAGAAGCATTGCAAATACA
GTCTGTTGTTCAATACACTCAGTATGTGATACTTTGTGTGGACACCTTAC
TTAAATAAGACAATTATCAAGTAAGTCTCTCTCCCTGTCACTGATTGGCT
TCTCTGTGATCTCAATCTAAAAGAGCTAGAGATTTAGTACCACATAAACC
AGGAACCTGAACAAGAGAAAAGAGCAATGGGTTGAGTGTTTTCCTCTCTA
AAATGCAAATTTCCCTTCATAGGGNATTGAAGATCTCTAGTGGAATAACA
GCCAAAAGTTTCTTTTTCTTTTTTTTAAAAAAGGGGCTTGTTACTTTGGC
CCCAAAGTCTAGTCTGGGGTTTAAAAGAAAAATGGGGTGGGGACTTTGGA
GAAAAGGTTTATTGGTACTAAAACAAGGGTTTTGGGGCCCCCCATTAAAA
ATTGCCACTTGGTAAGACCTTTACTCTTTTGGGAG

TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CAACTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGAA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTAAGGGGAG
TAACCCATTCCCCAAGGAACTCTCCCATAAGTACTCCCGGAAAAGGGGAA
TTACCCCCATTCCCGGATACCCCAGAAATAAAAAAAATTTTGGTTTCCCT
CGGAAATCTAAAAAATGAGAATTGGTTGGGGCCTTTTGCCCCCTCTCTTA
ATTGGGAAGAAAACCCCCGGGTGGGGGTGTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h24.b1 MSMg01no360_h24.b1 CHROMAT_FILE:
MSMg01no360_h24.b1 PHD_FILE: MSMg01no360_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:16 2005
         (453 letters)



>mm_chr12_97447444_97448292
          Length = 849

 Score =  532 bits (275), Expect = e-155
 Identities = 311/325 (95%), Gaps = 4/325 (1%)
 Strand = Plus / Minus

                                                                       
Query: 129 aagaaagagaagaatcatcagggcttcctaacagacagtcctttaacagagataaaaggt 188
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagaaagagaagaaacatcagggcttcctaacagacagtcctttaacagagataaaaggt 605

                                                                       
Query: 189 cacatcaagacacagcaagtcaacaggctgttgaaaagcctgaagaatggtctcaccaca 248
           ||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||   
Sbjct: 604 cacatcaaggcacagcaagtcaacaggctgctgaaaaccctgaagaatggtcttacc--- 548

                                                                       
Query: 249 aacaaatgctgttaagaccttcagaataaactttaaaaccctagaagcattgcaaataca 308
            |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 547 -acaaatgctgttaatatcttcagaataaactttaaaacgctagaagcattgcaaataca 489

                                                                       
Query: 309 gtctgttgttcaatacactcagtatgtgatactttgtgtggacaccttacttaaataaga 368
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 488 gtctgttgttcaatacactcagtatgtgatactttgtgtggaggccttacttaaataaga 429

                                                                       
Query: 369 caattatcaagtaagtctctctccctgtcactgattggcttctctgtgatctcaatctaa 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caattatcaagtaagtctctctccctgtcactgattggcttctctgtgatctcaatctaa 369

                                    
Query: 429 aagagctagagatttagtaccacat 453
           |||||||||||||||||||||||||
Sbjct: 368 aagagctagagatttagtaccacat 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 849
Length adjustment: 10
Effective length of query: 443
Effective length of database: 839
Effective search space:   371677
Effective search space used:   371677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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