BAC Information

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BAC

Clone NameMSMg01-360O19
Chromosome12 (Build37)
Map Location 76,934,624 - 77,070,627
singlet/doubletdoublet
Overlap geneSyne2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1
Downstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360O19.T7 (MSMg01no360_o19.b1)MSMg01-360O19.TJ (MSMg01no360_o19.g1)
ACCAG469981AG469982
length736751
length of high quality
(start - end)
438 (45 - 482)479 (75 - 553)
definitionCHROMAT_FILE: MSMg01no360_o19.b1 PHD_FILE: MSMg01no360_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:48 2005CHROMAT_FILE: MSMg01no360_o19.g1 PHD_FILE: MSMg01no360_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,070,198 - 77,070,627)(76,934,624 - 76,935,102)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTAGCCGTTACAGCTTCTAAAGTACAATGAAGTTGCTCTTTGGCC
TCAGGGCTGGAGATAGCCCCCAAAGTCTCGGTGAGGCTCCGTAAATCAGC
TACGGAGGATTGCAGTTCCTCTTGTTTAAGGTGTGCCAGCTCCAGTGTCT
TTTGGGGATTGTGAAGGTCTACTCTGTACAACAAAAGCGTGGCTTCCAGG
GACGTGACGATTCTCGATGCCCCGGCTACTAACTCGTCATAGCGGTTTGC
ACTGTCATAAGCATCGTTCAGGATATCCTGGTGAATTGGTGATCAAACAC
TATCACGTCATTTCCCAACTTGGGGGATTTCTGTTATTCTCAAATATGGT
GGCATTCGCTCATTCCCTGACCCTCAGGAAAGCTGACTGCCTGTTCTTAA
AGGTTTTACGGCTTTACATTAACATTTCATAATGAGTAACTAACAGGGAA
AATACTCATATTTTCAAAGAAATGTAAATTTAAAATAACCTCTCACTAAC
CTTGTCAGTCAGTATATAATTCCTATTTTGCGATTCTTGCACAAGGCTAT
GAATTGCTTGAAACATTGTATATTTTGTCTATAATCTTAATACCTATGGT
CATTTGTATCAGATCTCCTGTATTTCACATGACTAATATATCTGCCTTTT
CCCTCCCTTTCCCACTTTTTTTCAAAGCCCCCTCTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTATGCTTCATTCATTTGAATATT
TCCAAACCCTCGCTGTAACTCACTGCTTTCCCTAGACTTTGCACTTCCTC
CTTTTCACCTAGAATCTTGGTGTCGTGGTTTGTTCCTGAGGTGTCATAAA
CCCGGCTCTTATTTTAGTCCTCCCTTCTGAAAGCCCGGCACACATCAACT
CTAACCCACTTTAAATATTCTTGGCTTGGCTGGTGGATCCTGGACGTAAC
CAGGGTAAGAATTTCAAGACCTTGAGCTTCTCACTTGCTGTGAAACCAGT
TCTGTTAGTTAATTTATCACAGCAGTTTGACAGCCAAATGCAGTCGTGGG
CAAAAGCATGTTTCCTTTTCCTTATTCTCCCTCTCTCTGTCTGTCTCTCT
CTGTCTCTGCCTCTCTCTTTGAGAAAGAGCGGAGAAGCTGGAGATGTAGC
TCATTCAGCGGCTTGCTTGTCATGTGTGCGCAGTGCCCTGGGTTTGATTC
TCAATACTGCATAACCAAGTGTTCAGGCTGGCGTGTCTGTAGACATGTGG
TATTATTTTTCTCTATCAACTGCGTAGTGCAAGATAGGATTGGACCTATG
CTTCCTAAAAAGGTTTCTCGTGGCTCGGTCAAGGACCTGCCCTTTTAACC
TTACTTGATTTGGGCTTCAATTTATTTCTGCTTATCCTTCTGATGCGCGA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_o19.b1 MSMg01no360_o19.b1 CHROMAT_FILE:
MSMg01no360_o19.b1 PHD_FILE: MSMg01no360_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:48 2005
         (438 letters)



>mm_chr12_77069993_77070830
          Length = 838

 Score =  708 bits (366), Expect = 0.0
 Identities = 414/430 (96%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttagccgttacagcttctaaagtacaatgaagttgctctttggcctcagggctg 65
           ||||||||||| | || | |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 635 gaattcttagctgctagaacttctaaagtacaacgaagttgctctttggcctcagggctg 576

                                                                       
Query: 66  gagatagcccccaaagtctcggtgaggctccgtaaatcagctacggaggattgcagttcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagatagcccccaaagtctcggtgaggctccgtaaatcagctacggaggattgcagttcc 516

                                                                       
Query: 126 tcttgtttaaggtgtgccagctccagtgtcttttggggattgtgaaggtctactctgtac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcttgtttaaggtgtgccagctccagtgtcttttggggattgtgaaggtctactctgtac 456

                                                                       
Query: 186 aacaaaagcgtggcttccagggacgtgacgattctcgatgccccggctactaactcgtca 245
            ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct: 455 gacaaaagcgtggcttccagggacgtgatgattctcaatgccccagctactaactcgtca 396

                                                                       
Query: 246 tagcggtttgcactgtcataagcatcgttcaggatatcctggtgaattggtgatcaaaca 305
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 395 tagcggtttgcactgtcataagcatcgttcaggacatcctggtgaattggagatcaaaca 336

                                                                       
Query: 306 ctatcacgtcatttcccaacttgggggatttctgttattctcaaatatggtggcattcgc 365
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 335 ctatcacgtcatttcccaacttggggaatttctgttattctcaaatatggtggcatttgc 276

                                                                       
Query: 366 tcattccctgaccctcaggaaagctgactgcctgttcttaaaggttttacggctttacat 425
           |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 275 tcattccctgagtctcaggaaagctgactgcctgttcttaaaggttttacggcattacat 216

                     
Query: 426 taacatttca 435
           ||||||||||
Sbjct: 215 taacatttca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no360_o19.g1 MSMg01no360_o19.g1 CHROMAT_FILE:
MSMg01no360_o19.g1 PHD_FILE: MSMg01no360_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:48 2005
         (479 letters)



>mm_chr12_76934424_76935302
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttatgcttcattcatttgaatatttccaaaccctcgctgtaactcactgctttcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttatgcttcattcatttgaatatttccaaaccctcgctgtaactcactgctttcccta 260

                                                                       
Query: 61  gactttgcacttcctccttttcacctagaatcttggtgtcgtggtttgttcctgaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactttgcacttcctccttttcacctagaatcttggtgtcgtggtttgttcctgaggtgt 320

                                                                       
Query: 121 cataaacccggctcttattttagtcctcccttctgaaagcccggcacacatcaactctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaacccggctcttattttagtcctcccttctgaaagcccggcacacatcaactctaa 380

                                                                       
Query: 181 cccactttaaatattcttggcttggctggtggatcctggacgtaaccagggtaagaattt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cccactttaaatattcttggcttggctggtggatcctggatgtaaccagggtaagaattt 440

                                                                       
Query: 241 caagaccttgagcttctcacttgctgtgaaaccagttctgttagttaatttatcacagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaccttgagcttctcacttgctgtgaaaccagttctgttagttaatttatcacagca 500

                                                                       
Query: 301 gtttgacagccaaatgcagtcgtgggcaaaagcatgtttccttttccttattctccctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgacagccaaatgcagtcgtgggcaaaagcatgtttccttttccttattctccctct 560

                                                                       
Query: 361 ctctgtctgtctctctctgtctctgcctctctctttgagaaagagcggagaagctggaga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ctctgtctgtctctctctgtctctgcctctctcattgagaaagagcggagaagctggaga 620

                                                                      
Query: 421 tgtagctcattcagcggcttgcttgtcatgtgtgcgcagtgccctgggtttgattctca 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtagctcattcagcggcttgcttgtcatgtgtgcgcagtgccctgggtttgattctca 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)