BAC Information

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BAC

Clone NameMSMg01-360P06
Chromosome12 (Build37)
Map Location 35,794,137 - 35,794,557
singlet/doubletsinglet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360P06.T7 (MSMg01no360_p06.b1)MSMg01-360P06.TJ (MSMg01no360_p06.g1)
ACCAG470003AG470004
length760731
length of high quality
(start - end)
84 (168 - 251)421 (78 - 498)
definitionCHROMAT_FILE: MSMg01no360_p06.b1 PHD_FILE: MSMg01no360_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:50 2005CHROMAT_FILE: MSMg01no360_p06.g1 PHD_FILE: MSMg01no360_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCG
CGGAATTCAAGGCCTTTCCCTAAACATGATAAAAGCAATCTACAGCAAAC
CAATAGCCAACATCAAAGTAAATGGCGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGTCCACTCTAGCCCTACCTATTCAACAT
TGTACTTGAAGTCCTAGGCAGAGCAATTAGACAACAAAAGGAGATCAAGG
TGATACTAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTATTAATTCCACCAGAGAACTCCTATG
CCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCATACA
AGTCAATGGCCTTTCTGTACACCAAAGGATAAACAGGCTGATAAAGAAAT
TATGGAAACAACACCCTTCTCTTTATTCACAAATATTATAATATACCTTG
GTGTGACTCTAACTAAGGAAATGATAGACCTGTATGATAAGAACTTCATG
TTTCTCCCGATTGAACCCATTGAACATCCTCTAACGATGCTAAAACTCCC
CTACGCTTCTGGTTTGCTCCAGGACCATTATTTTTACACACGGTTTATTT
TTGGTCTAATCTATATATTCCTTATTCCATTGTATATTCCCCCTTCAACA
CCCTTTTTCTCCCGATATCACCTCACCCCTTTACTCCTGGCTCCTTTCTG
CTATGTAATC
ATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATAAACCAAAGATGAA
AAACCTAGATGAAATTTTCTGTACGTTTGTTTGTGGTCAGAGGCTTGGGG
AGCTAAGCAGTGTTCCTTGTTATTTAGAATAACATGTTCTCTAGAACAGA
AGGCTGTAACAGCTACTCTTTCAGAATTGTAAGTGATTCAGTCTTTTTGA
AGATTCATTTAAGAACGTTAAATTTATAAATGCGTTAAGATCTGGAAAAG
GTACATTAACTTTAAACTATATATGAATAGTGTTTTAGCATAGCTTTTTC
TTGTGTTTTTAAACTAAATTGAAAGTTTAATTTGCTTATATATATATAAT
AAAGCAAGGGGGAAAGAAGAGCAGATTACTGCATGTTAATAATCTTTCTT
TGATTGCTTTGCTAATGCCTATTTTTATTCTAACAGTTAAATTCTCTTCC
AAGGCTTAAAATAGTTTGTTTGTTTGTTTGTTCTGTTTTTGTTTTCAATG
CCACCTTTACAAGCATTTGATTCTCGTTTCACCCTGTACTTGTTTTTCTC
TCCTTNCATCTCTGACTTTTGTCTTTGTCTCTTCGAAACACCCATCTACA
TGTCCAGCTTCCTTTTCCAATTTCCTTCTTCTCCTTTTTACCCAATCGTT
ATTTTCTTTTTTTTACTTTTCATTCTTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_p06.g1 MSMg01no360_p06.g1 CHROMAT_FILE:
MSMg01no360_p06.g1 PHD_FILE: MSMg01no360_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:50 2005
         (421 letters)



>mm_chr12_35793937_35794757
          Length = 821

 Score =  768 bits (397), Expect = 0.0
 Identities = 415/421 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttataaaccaaagatgaaaaacctagatgaaattttctgtacgtttgtttgtggt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 201 tctgtttataaaccaaagatgaaatacctagatgaaattttctgtacgtttttttgtggt 260

                                                                       
Query: 61  cagaggcttggggagctaagcagtgttccttgttatttagaataacatgttctctagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggcttggggagctaagcagtgttccttgttatttagaataacatgttctctagaac 320

                                                                       
Query: 121 agaaggctgtaacagctactctttcagaattgtaagtgattcagtctttttgaagattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggctgtaacagctactctttcagaattgtaagtgattcagtctttttgaagattca 380

                                                                       
Query: 181 tttaagaacgttaaatttataaatgcgttaagatctggaaaaggtacattaactttaaac 240
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaagaatgataaatttataaatgcgttaagatctggaaaaggtacattaactttaaac 440

                                                                       
Query: 241 tatatatgaatagtgttttagcatagctttttcttgtgtttttaaactaaattgaaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatgaatagtgttttagcatagctttttcttgtgtttttaaactaaattgaaagtt 500

                                                                       
Query: 301 taatttgcttatatatatataataaagcaagggggaaagaagagcagattactgcatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttgcttatatatatataataaagcaagggggaaagaagagcagattactgcatgtt 560

                                                                       
Query: 361 aataatctttctttgattgctttgctaatgcctatttttattctaacagttaaattctct 420
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 561 aataatctttctttgattgctttgctaatgtttatttttattctaacagttaaattctct 620

            
Query: 421 t 421
           |
Sbjct: 621 t 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)