BAC Information

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BAC

Clone NameMSMg01-361O15
Chromosome12 (Build37)
Map Location 36,191,520 - 36,192,074
singlet/doubletsinglet
Overlap geneAhr
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361O15.T7 (MSMg01no361_o15.b1)MSMg01-361O15.TJ (MSMg01no361_o15.g1)
ACCAG470726AG470727
length1,097738
length of high quality
(start - end)
---558 (80 - 637)
definitionCHROMAT_FILE: MSMg01no361_o15.b1 PHD_FILE: MSMg01no361_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:05 2005CHROMAT_FILE: MSMg01no361_o15.g1 PHD_FILE: MSMg01no361_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCTCAAATAAATTTGTGCGGGCTGGCTTAAAACCGAACCCCACCT
ATACCGCGGACGAGGGAATCCGGCGTGAATATTCCATGATATTTCTTTAC
CCTTATGGAAACCCAATTTCCAGAAGGCCATTAAAGCACAGTCCTTTAAT
GGGCCTTTCTTAAATAATCCACCAGCAAATAATGGTAATAATAACACCTT
AAAACCCTTAACTAATTTTTCTGGTGTACACACCACCTGGCCACCCACCT
CATTAATTTTAACACCAAGCTTCTTTGGTCATAACTTTTCCTTGGGCCCT
GGTTTGAAGAATGGCGCCCCAAGTTTTGGCATAAAGGTGGCCTTAATTCA
CTGGCAGAATCAATGGGCAAATCCAACAGACCTGGCAATCCTCTGAACGG
CTTGCCACAATTATAACAACGCCTAATTCATGGGCGCGGCGGCGGTACTC
TTGGCCACAAACCCTAACCCCTTGGGTACACAGCCACATGAAAAGGGCTG
TAATCCCCTTGTTGAACATTTTCTAAGCCCTGGCCCAGAGTAATAACTCA
TAATCTGGGCGGAAGGTTCCCATGCGTTCCAGGTGGAAAAGCAATCCTGG
TCCCACCACAATAATAAACTCGGCTGACCTCAAATTGCAGGAAACCTTAT
CCCCACTATTGAGACCACCCGGTGCCCTCCAAAACACCANTGCCAAGGTA
ACCCCCCTTGAACACTATATTTACCATTACACTTTTGCCATAATGCCCCA
TTCGATCATTACAACCCCTTCTCCATGACATAATATCTCCCTCTTTCGTT
ACACCAACCCGTTGCCACACCGAATCTTGCCACCTTAATTCACCATTAAT
CACCCTGACACATTGACAGCTCGTCTTCACGAGTATGTACCACATGCTCA
TAATAAATACCTTTTCCAAATATAACCATCTTTTCTCAAATCACACCAAC
ACTCCACATGCTATACCTCAAAGCTTTCTACTTCTCCTCGACTGCATATT
ACATTACCTTTATTCTANTGAAATAAACATCCTCATCTCTTACCGACAAT
GTTGTGCCTCATACAATAACTGCTGGTTCGACACAATANCGATTATG
ACACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGACCCGCCTGATATACG
GCACATGTATTAGAACATATTAAGCTTTTTAAAAATCCTTTGATTCCTGT
GTGTGCATGTGGGGGCCAGGAGCCAACCTGTAGGAGGGAATTCTCTTTGC
CTTTGTGCGTCCCTAGGATCAACCTCAGTTAGTCAGGCTTGGTGGCAAGC
ACCTATAGCCACGGAGGCATCTCCCAGCACTGTGATACACATTTCAAAGT
GTTGTGTGTGATGACATCATCTGAGAACTACTTGGATCCATCCCATTGGA
GTCATGCTGCCTTGGTTAACCAGTTTTGCTTTTTACTTCTAATTCCTCTA
CAGCTGCTATGCAGTAATGGTTACAATATGATTATTATGAAAGTAACTAT
GTTGGCCAGTGGATTTTTGCTCAGGAAGTCTTTAAAGGCACCATGCATAT
ATGTTAATATAAAGTCGGGAAATACTAAAAATATTCCTCATTTAACATGA
ATATGTTTACTTCTCCTCCAAGCTAACCTCTTCTTACACCTGACATGCTC
TCAGTATTTCTCTTAACCTTTTACATATTAAGCCTTATCTAATATGGNAA
AGCACAGACTCCGAGGAACCATTTCTGTGCCTTTCAGTGTGTTTAGTGCG
TTTAACAGTTTTTATGATATTGTCACAGCTGGGTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_o15.g1 MSMg01no361_o15.g1 CHROMAT_FILE:
MSMg01no361_o15.g1 PHD_FILE: MSMg01no361_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:05 2005
         (558 letters)



>mm_chr12_36191117_36192074
          Length = 958

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgacccgcctgatatacggcacatgtattagaacatattaagctttttaaaaatcctttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tgacccgcctgatatacggcacatgtattagaacatattaagctttttaaaaatcctttg 899

                                                                       
Query: 64  attcctgtgtgtgcatgtgggggccaggagccaacctgtaggagggaattctctttgcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 attcctgtgtgtgcatgtgggggccaggagccaacctgtaggagggaattctctttgcct 839

                                                                       
Query: 124 ttgtgcgtccctaggatcaacctcagttagtcaggcttggtggcaagcacctatagccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttgtgcgtccctaggatcaacctcagttagtcaggcttggtggcaagcacctatagccac 779

                                                                       
Query: 184 ggaggcatctcccagcactgtgatacacatttcaaagtgttgtgtgtgatgacatcatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggaggcatctcccagcactgtgatacacatttcaaagtgttgtgtgtgatgacatcatct 719

                                                                       
Query: 244 gagaactacttggatccatcccattggagtcatgctgccttggttaaccagttttgcttt 303
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 718 gagaactacttggatccatcccgttggagtcatgctgccttggttaaccagttttgcttt 659

                                                                       
Query: 304 ttacttctaattcctctacagctgctatgcagtaatggttacaatatgattattatgaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttacttctaattcctctacagctgctatgcagtaatggttacaatatgattattatgaaa 599

                                                                       
Query: 364 gtaactatgttggccagtggatttttgctcaggaagtctttaaaggcaccatgcatatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtaactatgttggccagtggatttttgctcaggaagtctttaaaggcaccatgcatatat 539

                                                                       
Query: 424 gttaatataaagtcgggaaatactaaaaatattcctcatttaacatgaatatgtttactt 483
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gttaatataaaatcgggaaatactaaaaatattcctcatttaacatgaatatgtttactt 479

                                                                       
Query: 484 ctcctccaagctaacctcttcttacacctgacatgctctcagtatttctcttaacctttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcctccaagctaacctcttcttacacctgacatgctctcagtatttctcttaacctttt 419

                          
Query: 544 acatattaagcctta 558
           |||||||||||||||
Sbjct: 418 acatattaagcctta 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)