BAC Information

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BAC

Clone NameMSMg01-362H07
Chromosome12 (Build37)
Map Location 27,965,137 - 27,965,484
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H07.T7 (MSMg01no362_h07.b1)MSMg01-362H07.TJ (MSMg01no362_h07.g1)
ACCAG471137AG471138
length766788
length of high quality
(start - end)		568 (42 - 609)436 (73 - 508)
definitionCHROMAT_FILE: MSMg01no362_h07.b1 PHD_FILE: MSMg01no362_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:50 2005CHROMAT_FILE: MSMg01no362_h07.g1 PHD_FILE: MSMg01no362_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTCTGTGCGCTGAACTACAGAGGAAGCAAAATCAGAAAGCACCTTAG
AGAGAAAGGACGAGTCAGCTGGTGATTCAATTATTGCATTACTTATAATG
GTTGGCTTTAACTGTCACGTTGACACAATCTAGAATCACCTAGGGAGTCT
AGAAGGATTGTGTAGATGAGGTTGGCTTACTGGCATGTCTGCAGGCTATT
ATGTTGCTTATAACCATTGGGGTGGGAATATCTGCCCACTGTGGGTGTCA
CCATTCCCTGGATAGAGGATTCTATACCATGCAGAGAAGGCAAGCTAAGC
ACAGGAATGCATGCATCCATTCATTGCTCTCTACACTTGACTGTGACTCT
TACTACCTGTTTCAAATTCCTGACACCTAATGTAATCAAAAACTGTAAGA
TGAATAAACTTTTTTCTACTTCTGTTGTTTCTACTGAAGTATTTTTATTA
TGGCATGAGGAAAGGAAAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG
AAAAGAAAGTATTAACCAAGGCTTACACTACCATTTTCTTAGACTTACTT
TAATGTAAAACACATGATATTTGATTATAGATGACCATTATGAAGACACT
TCTTGTTAGACATTACACTAAATATTTCCGAACATTATTTTTCCCCGCAA
TGTTGTGTTTAATGAG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACTAGGGAGCCAAACAGAACAAATGT
TGAGGACTAAAACTCCACCCAGACTACATCGTAGGTTTGCAGTCCATGTC
TACATTTCTGGCTTCTTCTTCTGCCAACAGGAAACAGTTTTATGTTTGTT
GTAACTGTCTAAACAATGGCATATATATATATATATATATGTATATATAC
ATATATATATACATACATATATATATACATATATATATATGGGGTGTTTG
TATATGCATAGGCATGCACATGTGTGTACGTGTATGCTCATACATATTGG
TGCATGTGTGTGTGTGTGTGTGTGAATGTGAAAGCCTCAGACTGATATCC
AGAACTATCCATGATTGCTATTGCACCTTGTTCAATGGAATAGGAAATGC
TCAATCAAACCCAAAGTTTGTCTATATGGCTAGTCTCACCAGCCAGCTTG
TGTGGCTTAAATTATAGGAGATGCATCCATCCACCTAGTATTTATATGAG
TTCTGGGGATTCATACTCTGGTCCTCTTGCTTGTGTGAAAGTGTTTTAAC
TACTGAGCCATCTCCCCACCCCAACTGTTTTAGCCCTTAGACCCTATATA
AACTTTTCCTGTCAATTTCCAGGAATTGAAAATCCAAAAATGTATTCTAC
CATTTCTCAACCAAACACAATATATAGATTGTATCCCCCACAAAAGTATC
CCAATTTTGTTCCTATTTCTAAAAAAAATTTGCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h07.g1 MSMg01no362_h07.g1 CHROMAT_FILE:
MSMg01no362_h07.g1 PHD_FILE: MSMg01no362_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:50 2005
         (436 letters)



>mm_chr12_27965137_27965972
          Length = 836

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactagggagccaaacagaacaaatgttgaggactaaaactccacccagactacatcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcactagggagccaaacagaacaaatgttgaggactaaaactccacccagactacatcgt 289

                                                                       
Query: 61  aggtttgcagtccatgtctacatttctggcttcttcttctgccaacaggaaacagtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aggtttgcagtccatgtctacatttctggcttcttcttctgccaacaggaaacagtttta 229

                                                                       
Query: 121 tgtttgttgtaactgtctaaacaatggcatatatatatatatatatatgtatatatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtttgttgtaactgtctaaacaatggcatatatatatatatatatatgtatatatacat 169

                                                                       
Query: 181 atatatatacatacatatatatatacatatatatatatggggtgtttgtatatgcatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atatatatacatacatatatatatacatatatatatatggggtgtttgtatatgcatagg 109

                                                                       
Query: 241 catgcacatgtgtgtacgtgtatgctcatacatattggtgcatgtgtgtgtgtgtgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 catgcacatgtgtgtacgtgtatgctcatacatattggtgcatgtgtgtgtgtgtgtgtg 49

                                                           
Query: 301 tgaatgtgaaagcctcagactgatatccagaactatccatgattgcta 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tgaatgtgaaagcctcagactgatatccagaactatccatgattgcta 1



 Score = 66.5 bits (34), Expect = 3e-15
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                             
Query: 149 atatatatatatatatatatgtatatatacatatatatatacatacatat 198
           |||| ||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 151 atatgtatgtatatatatatgtatatatacatatatatatatatatatat 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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