BAC Information

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BAC

Clone NameMSMg01-362K21
Chromosome12 (Build37)
Map Location 105,202,655 - 105,203,102
singlet/doubletsinglet
Overlap genenone
Upstream gene9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e
Downstream geneSerpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362K21.T7 (MSMg01no362_k21.b1)MSMg01-362K21.TJ (MSMg01no362_k21.g1)
ACCAG471307AG471308
length451763
length of high quality
(start - end)		---456 (79 - 534)
definitionCHROMAT_FILE: MSMg01no362_k21.b1 PHD_FILE: MSMg01no362_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:08 2005CHROMAT_FILE: MSMg01no362_k21.g1 PHD_FILE: MSMg01no362_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGGGGANNCTTCCTTCAATACCGATCNACTCTGAAAAGAAAGGCACTG
ATGCTATTANGATGTCAGTCTCATACTGAGTGCGAGTGCGAATGTTATTG
TAATGGCACATCGACCCAGCTTACTAANGNTCATCTCAGCCTTCCTCAGA
GAATGNATTTTNANGTTAANTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCNNNNNCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCNNNNNCNNNNNNNNNNNNCNNNNNNNNNCNNNNNCCCC
CCNNNNNNNCCCCCCNNNNNNCCCCCCCCCCCCNCCCCCCCCCCCCNNNN
NCNCCCCCCNCCCNNNNNNNCCCCCCNNNNNNNCCCCCCNCNCCCCCCCC
CCCCCCNNNNNNNNNCCCCCCCCCCNNNNNCCTAAAAAAGGGAATTGATC
A

NNTTCTATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCTAGCCTGGTCTAAATAT
TGAGACCCTGTCTCAAGCATCAGCCACCAAAAAGGTGAGGAAAAAAACAG
AGAAATTCATAACACTGTAAAGGGTAAGGGTATAGATACATGTGCACATA
CACACACACACACACACACACACACACACACACACACACACAGTATATGT
ATAGAAGATTTCAGAAGGAGACAAAGTGGTGATTATCCCAGAACACAAAC
TTACCAGCGAGAGCCGCTAAGACTTTGTTCTTTATCTTCTCATACATTGC
TTATGTTTCTACAAGAACAGCATGCCTCTGTAAGAAAGGCCTTTACTTCA
TTTTGACTTAATCAAATGGATGCTGCATTGGAATGTGTGGTTGTTTCTTT
CATGGTCCTTAGATGGCGCCTTTCTGTGGTCCTACTAACTCCTGCCTGGG
AACACAGCCTGAGGAAGCAGACTGTTGCCCAGCAGACTCTGCTGGAACTG
GGCTTAGATCTTGTGTAGTTGCTTCCTGGTGTGAGAACTTAGGATAAAAT
GTTTATCTTTCCTGAGGTTCTACCAGGAACATCTCCAGGGATTTCATTAA
AAACCCGGGAGATGGTAAGGATTTTGTTTTTGCAAAATTAACCCTGGTGA
CAACTTTCTTGGGTAGACACCCTGCAGAAAGGCCTATCTTTTTTGTTCTA
AACACCCGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_k21.g1 MSMg01no362_k21.g1 CHROMAT_FILE:
MSMg01no362_k21.g1 PHD_FILE: MSMg01no362_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:08 2005
         (456 letters)



>mm_chr12_105202447_105203302
          Length = 856

 Score =  847 bits (438), Expect = 0.0
 Identities = 448/456 (98%), Gaps = 8/456 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggctagcctggtctaaatattgagaccctgtctcaagcatcagccaccaaaaaggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taggctagcctggtctaaatattgagaccctgtctcaagcatcagccaccaaaaaggtga 268

                                                                       
Query: 61  ggaaaaaaacagagaaattcataacactgtaaagggtaagggtatagatacatgtgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaaaaaaacagagaaattcataacactgtaaagggtaagggtatagatacatgtgcaca 328

                                                                       
Query: 121 tacacacacacacacacacacacacacacacacacacacacacagtatatgtatagaaga 180
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 t--------acacacacacacacacacacacacacacacacacagtatatgtatagaaga 380

                                                                       
Query: 181 tttcagaaggagacaaagtggtgattatcccagaacacaaacttaccagcgagagccgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcagaaggagacaaagtggtgattatcccagaacacaaacttaccagcgagagccgct 440

                                                                       
Query: 241 aagactttgttctttatcttctcatacattgcttatgtttctacaagaacagcatgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagactttgttctttatcttctcatacattgcttatgtttctacaagaacagcatgcctc 500

                                                                       
Query: 301 tgtaagaaaggcctttacttcattttgacttaatcaaatggatgctgcattggaatgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaagaaaggcctttacttcattttgacttaatcaaatggatgctgcattggaatgtgt 560

                                                                       
Query: 361 ggttgtttctttcatggtccttagatggcgcctttctgtggtcctactaactcctgcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttgtttctttcatggtccttagatggcgcctttctgtggtcctactaactcctgcctg 620

                                               
Query: 421 ggaacacagcctgaggaagcagactgttgcccagca 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaacacagcctgaggaagcagactgttgcccagca 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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