BAC Information

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BAC

Clone NameMSMg01-364M07
Chromosome12 (Build37)
Map Location 12,974,912 - 13,167,150
singlet/doubletdoublet
Overlap geneEG668473, LOC628449
Upstream geneLOC100043209, D12Ertd553e, LOC100043215, Mycn
Downstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364M07.T7 (MSMg01no364_m07.b1)MSMg01-364M07.TJ (MSMg01no364_m07.g1)
ACCAG472884AG472885
length792747
length of high quality
(start - end)		252 (76 - 327)414 (81 - 494)
definitionCHROMAT_FILE: MSMg01no364_m07.b1 PHD_FILE: MSMg01no364_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:00 2005CHROMAT_FILE: MSMg01no364_m07.g1 PHD_FILE: MSMg01no364_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,166,900 - 13,167,150)(12,974,912 - 12,975,325)
sequence
GGAAATGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAAT
CCGCGGAATTCCAAGTGTTTCCACACAACTGCCACCCAAGCTGGCTGTAA
AAGTGACCGTAAAGTCACTTCACCTGGTCCTGGCAGAAGGCTGACTTTTT
GTTTTTCTTGTCCTACTCAGCATGGAAAGCATTTGATGCTCTGAGGGTAT
GACCACAGTCCACCACATGTATGGACACAAGTCCACCACAGACAGCATGG
CTGGGAGACAGAGACAAAACAGGACTAGGAGTGTGGGAGAGGGTTCAGAA
GGGGACTCATCAGTGGGGAACAGATCTTTCTTATAGGACCTGGGAGGAGG
AATCAGGAAATGTTGGAGTTTGGGGAGCACCATTAGTTGTGCTCTCTTTC
TGGTATGACAACCGTCTCTTTCATCCCCACTCTACATTCTCTGGGTGTGT
GCTGCCCTGTACCGATTAACTACGCACTCTGAAACATCCTTTGACCATTA
ATCCATGTTGTCTGTGCACAATTTTTCGTAACCTCTTTCCTTCTTTTCCC
CCCTCTTTTCTTTCATATTCCCCTTTTCATTTTCTCTTTTTTCTTTATTT
ACTCATTGTTCCTCTCTTTCACTCGTTTCCTTTTTTATTCTTTTCTCCAT
ATCTACTTATTCCTACCGTATTCTTTCTTCTTTTCCCCCTTTTATCTACT
CTCTGTTTTTTTTCTCATTTTTTTTCCTTCATTTTCATTTTACTTTTTTC
CTTTTCTTCTCCGTATCCACTTCTCTCGTCCCTTAATTTCCC

TTCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGGTCTACTCACTCTT
CTCCAAAGAATCCTCCCACGTGTGAGGATGCCTGTGTCTGGGATTCCTCA
CCCACCTACCCTCTGGAGCCTGCCAACACCCAACTTCATCTCCAATTCCC
CAGCTACTCCCTGCCAGGGGCAGTTCTTACTCTTCCCTCCCTCTTCTGCC
CCACATTTAGAATCATCTTTCTTTCCTCGATCTCCCCACCTCTTCTAAAA
ACTGTCTGTATCCCTTTGTTGATTGCTGTATGATTCAGATAACTGCTGCC
CCACCCACCCAAACCCATCTTTGAAGCTTTGGTCCCCATGAAGGCAACTT
GGAGTTTATGGAAACTTTGAGGNAGAACCTTTGGATTATTGGAGGTCCAA
CTTCTGTGGGATCCTCCTCTTTTCTCCTGTCTCTCTCTTTCCCTCTCAGT
TATGAGGTTAATCATGAGGTGTCCTGAAGCAGCAGGGCTAGTAAATCAAA
CTCTTCCCTTAACGAGCTGATTTCCTGTGTTAATTTGAACATGAGAGAAA
AAGCCAGCTAGGTCCCTATGTTAATAAAAATTTGTACGATTGGTTATTGA
TGTATTTTATTCCAATTCATACCAAAATATTTGTGTTCTTTATCCCCTAC
ATGCTCAATTTTTTTTTTTCATTCCTCTTGTATAATCTTATTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_m07.b1 MSMg01no364_m07.b1 CHROMAT_FILE:
MSMg01no364_m07.b1 PHD_FILE: MSMg01no364_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:00 2005
         (252 letters)



>mm_chr12_13166700_13167351
          Length = 652

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactgccacccaagctggctgtaaaagtgaccgtaaagtcacttcacctggtcctggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caactgccacccaagctggctgtaaaagtgaccgtaaagtcacttcacctggtcctggca 392

                                                                       
Query: 61  gaaggctgactttttgtttttcttgtcctactcagcatggaaagcatttgatgctctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaaggctgactttttgtttttcttgtcctactcagcatggaaagcatttgatgctctgag 332

                                                                       
Query: 121 ggtatgaccacagtccaccacatgtatggacacaagtccaccacagacagcatggctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggtatgaccacagtccaccacatgtatggacacaagtccaccacagacagcatggctggg 272

                                                                       
Query: 181 agacagagacaaaacaggactaggagtgtgggagagggttcagaaggggactcatcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agacagagacaaaacaggactaggagtgtgggagagggttcagaaggggactcatcagtg 212

                      
Query: 241 gggaacagatc 251
           |||||||||||
Sbjct: 211 gggaacagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no364_m07.g1 MSMg01no364_m07.g1 CHROMAT_FILE:
MSMg01no364_m07.g1 PHD_FILE: MSMg01no364_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:00 2005
         (414 letters)



>mm_chr12_12974712_12975525
          Length = 814

 Score =  787 bits (407), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgggtctactcactcttctccaaagaatcctcccacgtgtgaggatgcctgtgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgggtctactcactcttctccaaagaatcctcccacgtgtgaggatgcctgtgtctg 260

                                                                       
Query: 61  ggattcctcacccacctaccctctggagcctgccaacacccaacttcatctccaattccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggattcctcacccacctaccctctggagcctgccaacacccaacttcatcttcaattccc 320

                                                                       
Query: 121 cagctactccctgccaggggcagttcttactcttccctccctcttctgccccacatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctactccctgccaggggcagttcttactcttccctccctcttctgccccacatttag 380

                                                                       
Query: 181 aatcatctttctttcctcgatctccccacctcttctaaaaactgtctgtatccctttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatctttctttcctcgatctccccacctcttctaaaaactgtctgtatccctttgtt 440

                                                                       
Query: 241 gattgctgtatgattcagataactgctgccccacccacccaaacccatctttgaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgctgtatgattcagataactgctgccccacccacccaaacccatctttgaagcttt 500

                                                                       
Query: 301 ggtccccatgaaggcaacttggagtttatggaaactttgaggnagaacctttggattatt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ggtccccatgaaggcaacttggagtttatggaaactttgaggtagaacctttggattatt 560

                                                                 
Query: 361 ggaggtccaacttctgtgggatcctcctcttttctcctgtctctctctttccct 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggtccaacttctgtgggatcctcctcttttctcctgtctctctctttccct 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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