BAC Information

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BAC

Clone NameMSMg01-364O02
Chromosome12 (Build37)
Map Location 78,587,584 - 78,674,450
singlet/doubletdoublet
Overlap genenone
Upstream genePlekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364O02.T7 (MSMg01no364_o02.b1)MSMg01-364O02.TJ (MSMg01no364_o02.g1)
ACCAG472970AG472971
length826771
length of high quality
(start - end)
244 (72 - 315)525 (75 - 599)
definitionCHROMAT_FILE: MSMg01no364_o02.b1 PHD_FILE: MSMg01no364_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:10 2005CHROMAT_FILE: MSMg01no364_o02.g1 PHD_FILE: MSMg01no364_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,587,584 - 78,587,826)(78,673,929 - 78,674,450)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCTTTATTCNTTCCCGTATTTTGCCAGCATTTTCTTTAGGCCTCTG
ACAAAACTATAATGACATCCTTCCCATACCACCCCCAACCAAATTAGTTA
CTAGAGAACAGTAAAGTAGTCTTTGAAGTCAGGATAGATTCCCTACATTA
AGCCCGTTCACCACTGTGATGGTGGTAGTTGTAGGTGTCTCTCCTCTCGA
CTTCAGGCTCCAACATTCATCTTTTTCTCCCATGGGTCTGGTCTATCACA
GGTGTTCCCTGCAGCTATTAGCATTGTCCCTTTTTTTCCCTTAAGATGAG
GATGAGGCTGAGTTTAGGCTAGGACCAGAGCATCTCTGACAGTCATGACT
GTGAGGCTCTGGGAATTCACAGCATAAAGAAAGTGTTATTTGTGGAGCTC
CTGCTGCGAGCAAAATAGTCCTGGCCTTTCACAGCGTTCTCCCACAGTTA
TTTGATGGTGGTTCTTTCTTGTCTGGAGTTCTCATTGTCTCCCCCTCGCT
TACCTTGTTGCGCTACTTCTTTCCTGTTTTTGGTTATTCGCCTTTTGTCC
TCTTTCTTTCGCCCTACTTAATTTTTGCTTCTTTTTTCTCGCATGTCGTT
TTGTACCATCTTTTGCTTCTTTGATTCCTACTCTTTTCCTTTCTTATTTT
TCTCTTTTTAATATTTCTATTTCGTCTTTATTCTTGATTCTCTCTTTCAA
TTATATTTTTCTATTATATTTTTGCCACCACTTTTTTCTATCTCCCTATT
AATCCTCTTCTGTATTACTATATTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAAGGTAGCTTAACTCAAATACTG
AACGGGGGCTTGTCAGTTCAGTAAGACATGCAGGCAGGACCTAAGACATT
TTGCATGTCTGTGGCTCTGGGAACATTCAGGTTTGAGGGTCGGCCTGGGT
GGGTCATTCATTTTCAACCATCAACCCAAAGAACTGCTGTAGGAAGAGGT
CAAACGGACTCGTTTTTACTTTAGTGACACTGCCTGGTCATCTGTCAGGA
ACAAGGCAAGCTCTGGAAGTCTCTTTCTTTTTCTATTGTCTAGGATGAAG
GCCAACTTTGGAACATTAAGAGAAAAAGCACGTTGAACTCCTGGATTCGG
GAGGGGCACCCCCAAGTGCACTTGCAGGGCCATGTCTCTGTGCCTGACTC
TGCATATCAACAAAACCCCAGTGTCCTTGGGGATCGACAACTGATTTTTG
TCAACTGGTGACTGAGTTTCAGGTCTTGTCCTGAACCTGATTAATTAGGG
GATGGAGCATCGGGCCAGAGTATACTATAATTCACCAGAGACTGTTATTG
CTTGAAAATGTATATTTTCATATGATTCGCTATCTATTTATACCCACAAG
ATAAATGCATGGAGCCTGTCCTATTAAAAATTCACCACAAATGCTGGTTC
TGCGATTTTTGGTCCTCCTTCACTTCTCTTCCTTCCTTTGTTTTTCCCTC
CCTTTTTTTCTTGCTGATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_o02.b1 MSMg01no364_o02.b1 CHROMAT_FILE:
MSMg01no364_o02.b1 PHD_FILE: MSMg01no364_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:10 2005
         (244 letters)



>mm_chr12_78587384_78588027
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgccagcattttctttaggcctctgacaaaactataatgacatccttcccatacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgccagcattttctttaggcctctgacaaaactataatgacatccttcccatacca 260

                                                                       
Query: 61  cccccaaccaaattagttactagagaacagtaaagtagtctttgaagtcaggatagattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccccaaccaaattagttactagagaacagtaaagtagtctttgaagtcaggatagattc 320

                                                                       
Query: 121 cctacattaagcccgttcaccactgtgatggtggtagttgtaggtgtctctcctctcgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctacattaagcccgttcaccactgtgatggtggtagttgtaggtgtctctcctctcgac 380

                                                                       
Query: 181 ttcaggctccaacattcatctttttctcccatgggtctggtctatcacaggtgttccctg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaggctccaacgttcatctttttctcccatgggtctggtctatcacaggtgttccctg 440

              
Query: 241 cag 243
           |||
Sbjct: 441 cag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no364_o02.g1 MSMg01no364_o02.g1 CHROMAT_FILE:
MSMg01no364_o02.g1 PHD_FILE: MSMg01no364_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:10 2005
         (525 letters)



>mm_chr12_78673729_78674652
          Length = 924

 Score =  951 bits (492), Expect = 0.0
 Identities = 516/524 (98%), Gaps = 3/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaggtagcttaactcaaatactgaacgggggcttgtcagttcagtaagacatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attaaggtagcttaactcaaatactgaacgggggcttgtcagttcagtaagacatgcagg 663

                                                                       
Query: 61  caggacctaagacattttgcatgtctgtggctctgggaacattcaggtttgagggtcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caggacctaagacattttgcatgtctgtggctctgggaacattcaggtttgagggtcggc 603

                                                                       
Query: 121 ctgggtgggtcattcattttcaaccatcaacccaaagaactgctgtaggaagaggtcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctgggtgggtcattcattttcaaccatcaacccaaagaactgctgtaggaagaggtcaaa 543

                                                                       
Query: 181 cgg-actcgtttttactttagtgacactgcctggtcatctgtcaggaacaaggcaagctc 239
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 -ggaactcgtttttactttagtgacactgcctggtcatctgtcaggaacaaggcaagctc 484

                                                                       
Query: 240 tggaagtctctttctttttctattgtctaggatgaaggccaactttggaacattaagaga 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tggaaatctctttctttttctattgtctaggatgaaggccaactttggaacattaagaga 424

                                                                       
Query: 300 aaaagcacgttgaactcctggattcgggaggggcacccccaagtgcacttgcagggccat 359
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaagcacgtagaactcctgggttcgggaggggcacccccaagtgcacttgcagggccat 364

                                                                       
Query: 360 gtctctgtgcctgactctgcatatcaacaaaaccccagtgtccttggggatcgacaactg 419
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtctctgtgcctgactctgcataccaacaaaaccccagtgtccttggggatcgacaactg 304

                                                                       
Query: 420 atttttgtcaactggtgactgagtttcaggtcttgtcctgaacctgattaattaggggat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atttttgtcaactggtgactgagtttcaggtcttgtcctgaacctgattaattaggggat 244

                                                       
Query: 480 ggagcatcgggccagagtatactataattcaccagagactgtta 523
           ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 243 ggagcatcgggtcagagtatactataat-caccagagactgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)