BAC Information

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BAC

Clone NameMSMg01-364P17
Chromosome12 (Build37)
Map Location 41,527,699 - 41,528,110
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364P17.T7 (MSMg01no364_p17.b1)MSMg01-364P17.TJ (MSMg01no364_p17.g1)
ACCAG473048AG473049
length1,149767
length of high quality
(start - end)
---485 (83 - 567)
definitionCHROMAT_FILE: MSMg01no364_p17.b1 PHD_FILE: MSMg01no364_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:20 2005CHROMAT_FILE: MSMg01no364_p17.g1 PHD_FILE: MSMg01no364_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATCTCGACATTCTGTTTTCNTGCATCACGTGACGTATTTGTGTGT
TGAGGTTTTGTGTGGGTCCTTGTAGGAGCGATCTTTTTGTTTTGTGTTTG
CTCTATTGCGCGCGAAATATTTGTAGATTCATGAATTTCTCTTATACTTT
TCTACTCCTGCCTTCGGGGTCAGTCCGCGTGCCCGCCAGGTTGCTCGTAG
CGTGCGTATTAGAGACTAGCGTATGGCGCCGTGTAGCCTGCTCATGTCCA
TGTGTGAGTGATTCTCACTTCCTTGTAATAAGTCTATAGTTTTAAGCGCC
GTTAAGGACGACACCGTCAGGATAGCGAACCACCCAGAGTACAACCACGA
GTGCGCGAGCATAATCCCGTCACCCCTACTCACTGACTGTTGGCGGACCA
TGCTCCTATCGGTCCCCCCCGTGCTTCTTTCGGTTGTTATCTGACGCTCC
GCCGTCGGCCGCTGTTATCGCTTGGGCCGCGGGCGTCCCCGGTCGGTACG
CGATAGCTTAAACCGCCGGATTTTACTACCCACCTAATTCGCTCCCCCCC
GTTATTTCTCCCTCCCTCGGTAATTCGCCGCTCGCCTCGAGGCGCCCGGA
TCATCCCTGGTGATATACGCGTTTCCTCCTCGCACATTACGATCCGTTGC
TACGCTTTTGTTCTGGAATCTTGCGGCTCTGATCGTGGCCGCTTTCACGC
GCATTACGACTGTGCTCTGACAGCTCCGCCTTTATCGGCGAGCGGCGGGT
TATATGTACCACGCCATGTGGCTGTTGCCGTTCCCGCGTTGTGTTATTCG
ATGTCCCGTATAAGTGCGTTTTCGTCTGCGCCCGCATACCGCGCGCGCGT
TTCGGAATTCTATAATTACGTTCTTCCATACCCCGAGCCAGTATTATCGA
TGTTATATACTCGCTTCCGCGCCGGATACGACTTTCGTCTATCGTTCGCT
CCCTTCTCGCTCCTCTTCTATTCTTATGTTCGCTCATCTTGCCTTGGTCT
ACGCCTGCATCTATACTCGCCGTAACGCTTCCGTACCGCTGTCCGCATTA
TATCCCGCCCTGTCCGAAATTAACCTATACTCATCTCTATTGTCTGATCG
CCTGCCGCGCCCTGTTCTCTCTTCGATTCTTCCTCGCATTTATTCGCTN
NNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCATAGAAACTGAAG
CTATGAGAAGAAAACAACAACACGAAATTTTTAGAATGGAATGGTAACAA
AATAAACATTTCAGCGGAGAGACCCAATTCAAGTCAGCTGAGTGAAGATG
ACCGAAAGCATCTGTGGGCTCGACATAAAGCAAAGTTAACTAACTGCCCT
AAACCATGGACAGAAGTGAAGTTGCAGGGGGCTGGGGGGTGGGGAGGAAG
ACAGAGTCTCAGGACTCAGGGGACAATGACCAGAGGCCAAATACTCATTC
CACGGCAGTCCTAAAAGAAAAGATTGGTATGTAAAATATATTTCGAGAAG
ATAATGCCGAAAACCTTTTCAGATTTGATGAAGGGAATAGATTTCTAGAT
TCGAAGAGCATGGCAATACCAAACACACTAAGCTTGGAGAAAACCATGTC
TATGTATGTCATCATCAAACTACCGAAGACCAAATACAAATTCTCAAAAG
CAACCAGAAAACACCATACAATCAGTCATTATAAGATTATATACTTCTCA
CCACACACAGGGAGTCCAGGAGATTATGACAACACTTTTTGCCGTGTAAA
AATGAAAGAACCTTTCTCTTTAAATTTCCACTACTGCCCACATGGCTTTC
ATAAAATGAGGTCGTGCTAATGCTGGATATCAACATGGTCTCTTCAAAAC
CCGGTGCTTCTAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_p17.g1 MSMg01no364_p17.g1 CHROMAT_FILE:
MSMg01no364_p17.g1 PHD_FILE: MSMg01no364_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:21 2005
         (485 letters)



>mm_chr12_41527699_41528583
          Length = 885

 Score =  677 bits (350), Expect = 0.0
 Identities = 395/412 (95%), Gaps = 4/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcatagaaactgaagctatgagaagaaaacaacaacacgaaatttttagaatggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttgcatagaaactgaagctatgagaagaaaacaacaacacgaaatttttagaatggaat 353

                                                                       
Query: 61  ggtaacaaaataaacatttcagcggagagacccaattcaagtcagctgagtgaagatgac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggtaacaaaataaacatttcagcagagagacccaattcaagtcagctgagtgaagatgac 293

                                                                       
Query: 121 cgaaagcatctgtgggctcgacataaagcaaagttaactaactgccctaaaccatggaca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 292 cgaaagcatctgtgggcttgacataaagcaaagttaactaactgccctaaaccatggtca 233

                                                                       
Query: 181 gaagtgaagttgcagggggctggggggtggggagg----aagacagagtctcaggactca 236
           |||||||||||||||||||||||| ||||||| ||    | | |||||||||||||||||
Sbjct: 232 gaagtgaagttgcagggggctgggaggtgggggggggggatggcagagtctcaggactca 173

                                                                       
Query: 237 ggggacaatgaccagaggccaaatactcattccacggcagtcctaaaagaaaagattggt 296
           ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 172 gggaacaatgaccagaggccaaatactcattccacggcagtcctagaagaaaggattggt 113

                                                                       
Query: 297 atgtaaaatatatttcgagaagataatgccgaaaaccttttcagatttgatgaagggaat 356
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atgtaaaatatattttgagaagataatgccgaaaaccttttcagatttgatgaagggaat 53

                                                               
Query: 357 agatttctagattcgaagagcatggcaataccaaacacactaagcttggaga 408
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 52  agatttctagatccgaagagcatggcaataccaaacacactaagcttcgaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)