Query= MSMg01no365_c04.b1 MSMg01no365_c04.b1 CHROMAT_FILE:
MSMg01no365_c04.b1 PHD_FILE: MSMg01no365_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:33 2005
(613 letters)
>mm_chr12_80838022_80839034
Length = 1013
Score = 1166 bits (603), Expect = 0.0
Identities = 607/609 (99%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 5 gaattctagtctttctgcttgaccaaatagtcatctatacatatatatgttatacattat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctagtctttctgcttgaccaaatagtcatctatacatatatatgttatacattat 266
Query: 65 ataaatatatatatatataaacacatatgttttatatgtgtttatatatattaactatat 124
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ataa--atatatatatataaacacatatgttttatatgtgtttatatatattaactatat 324
Query: 125 atataatatgtgttttaacctattttttagaagaattgagtaatctgaccctggcccaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atataatatgtgttttaacctattttttagaagaattgagtaatctgaccctggcccaga 384
Query: 185 acagtattttgatcatgatgaacttctgtttaaagactgtagatttcttccacaattaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagtattttgatcatgatgaacttctgtttaaagactgtagatttcttccacaattaag 444
Query: 245 ctctcacgctacctctaaccctgactggtaaaaatgtcatgataaagggactagaatagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctcacgctacctctaaccctgactggtaaaaatgtcatgataaagggactagaatagt 504
Query: 305 atggtaggcatcagttgagcatctactcataatcctttcaggctgttctctactgaggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggtaggcatcagttgagcatctactcataatcctttcaggctgttctctactgaggga 564
Query: 365 agaaacaactcatatttgatttctgtcctttatgggaccttgaccattgtctctctcact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaacaactcatatttgatttctgtcctttatgggaccttgaccattgtctctctcact 624
Query: 425 tcattctatagttaactcagagtatctttgagataatgagatacaatgggcagtaaataa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcattctatagttaactcagagtatctttgagataatgagatacaatgggcagtaaataa 684
Query: 485 aaatacatatagtacttggtatcaagaagcttgggatgctccacccggggatccatccca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatacatatagtacttggtatcaagaagcttgggatgctccacccggggatccatccca 744
Query: 545 taatcagccaccaaacccagacactattgcacaatgccagaaagattttgctgaaggggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taatcagccaccaaacccagacactattgcacaatgccagaaagattttgctgaaggggc 804
Query: 605 cctgttata 613
|||||||||
Sbjct: 805 cctgttata 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_c04.g1 MSMg01no365_c04.g1 CHROMAT_FILE:
MSMg01no365_c04.g1 PHD_FILE: MSMg01no365_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:33 2005
(556 letters)
>mm_chr12_80986923_80987877
Length = 955
Score = 942 bits (487), Expect = 0.0
Identities = 502/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 49 aattgtattttatatgtctggatggtttgcctgcatgtatgtacaccatgtacacagaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 aattgtattttatatgtctggatggtttgcctgcatgtatgtacaccatgtacacagaat 896
Query: 109 aagaaggccagaagacagcattggatgcccccaggaactagaattataggcgttgtgagc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aagaaggccagaagacagcattggatgcccccaggaactagaattataggcgttgtgagc 836
Query: 169 catgatgtaggtgctggaacttaaacccagccctctggaagaacaacaagttctcttaac 228
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 835 catgatgtaggtgctggaacttaaatccagccctctggaagaacaacaagttctcttaac 776
Query: 229 tgaagagccgtttccagcccctggcttcctttctcactgctgtttcattctgatgcctgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgaagagccgtttccagcccctggcttcctttctcactgctgtttcattctgatgcctgg 716
Query: 289 gagtcagcctggtctaatgagtagggctcttaggtgggagtcccaggtctcagcaatgtc 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 715 gagtcagcctggtctaatgagtagggctcttaggtgggagtcccaggtctcagcaatgcc 656
Query: 349 aatcaaagcaagtcctttaatgtgcgtccattgcctcatctatgaaatgtgatttgtgct 408
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 655 aatcaaagcaagtcctttaatgtgcgtcaattgcctcatctatgaaatgtgatttgtgct 596
Query: 409 aagtgctttgaccatcacagagcactgtataaagacagggaagggttgctctcagctgta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aagtgctttgaccatcacagagcactgtataaagacagggaagggttgctctcagctgta 536
Query: 469 gttatgggattgaaaacaaggttttctggggggttttatggaagctgtgagttaaaacat 528
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 gctatgggattgaaaacaaggttttctggggg-ttttatggaagctgtgagttaaaacat 477
Query: 529 gacaggcagacaaacatgacaggccag 555
|||||||||||||||||||||||||||
Sbjct: 476 gacaggcagacaaacatgacaggccag 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
