BAC Information

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BAC

Clone NameMSMg01-365H13
Chromosome12 (Build37)
Map Location 119,181,561 - 119,182,115
singlet/doubletsinglet
Overlap geneDnahc11
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l
Downstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365H13.T7 (MSMg01no365_h13.b1)MSMg01-365H13.TJ (MSMg01no365_h13.g1)
ACCAG473418AG473419
length759748
length of high quality
(start - end)
511 (61 - 571)555 (59 - 613)
definitionCHROMAT_FILE: MSMg01no365_h13.b1 PHD_FILE: MSMg01no365_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:59 2005CHROMAT_FILE: MSMg01no365_h13.g1 PHD_FILE: MSMg01no365_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TGCTTTCTGCTTTGATCATGTTCACCCCTCCCCCACTTCCTTCCAGTTTT
CTAACCAACCTACTTCCAATTCCTCTTCCTTTTCTCTCTCCCCCTTCTTT
ATCCTCATTGGGTCCAGTTTGTGTTGGTAATACCATCCTTGTGTGTAAGG
CCTACCCTGAAGGATGGTTGATATACAAGTTGTCACACCGTTAAAGAAAA
CTGACTCTTCCTTCCCCATCAGCAATCAAATGCCAATGGTTCCTCCCCTT
GTCCTTGCTGTTTTTTTTGTCTGTCTGGCTTTAGCTGTGTAAGTCATGTC
CAAGCTGTTATAGTCCATTTGAGTTCATATGTACATCTGCCCTGCTGTGT
CTGGAAAACACTGTTTCCTTGAAGTCATCCAACACTTCTAGCTCCCTTTT
GCATAGACCCTTGAGCCTTGAGTGATGAGGTTATAAACATGTGTGTGTGT
GTGTGTCTATATATTGCATATATTGTATATGTATATATGTGTACATTTTG
TATATGTATATAATTATATAAAATATATGTATTTTTTCGAAAACCATATA
TTTACACAATTACCGCCATTTTTTCATCTTTCCCCTCTCCATTTTCTTTT
CTTTTTCTTCCACCCGATTCTTCCGTTCCTTCTTTTCCCCTTTCTTCCTT
ATTCATTCTTTTTTTCAATATTCTTTTTTTCCCTCCTTTTTTTTCCTGAT
TTTCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACAAAGAGGGTCTTACTCAAGACTCCTTCAGACAGGCCTACA
GTTAAACATGACACAATTATTCCACCACCAACATAACATTTAGTAACTGC
AAACCAGCTGACAAGGCAAGGTTTTTATTAATGTTACCACCACTGTGAGG
AGAGCCAGTCATTATAAAACAAATGTCAACAAAAGGTTGTCTCCTTTTTA
CTGTATTAGTTTGGTAAAATGAAAATTTATATCAGATAGGTAATACATCT
GTTAGCCAATATTAGGTCTCTTTCTAAGACAGACTATTGTTAAAAGAATA
TATGGGGAGCAAATTCAGGAAGAAGTAAAAATTATCTTTAAAAAATATTT
ATATCCTGAGAAACAAACGAGCATTCATCTTGCTGTGAGGTTACTCTGGG
CAAGATTCAAGTTCAGAGCCGACTTCCATGATACTTGTGGGGATTTGAAA
GATTAAAGTGATATAATTTTATAAAGATGCTTCACGGTTCAGCAACTTCT
TTGATATGTAAGCCAGTAAATTTGCTTTGGGGAAAAAAAATACATGTTGA
TAAATCTTCCCAGATATGTTTTCTGTCGATTGATTTGTTAGATATATTTT
AAATGAAATTAGGATTGTCTGGAGTTAGGGGGATTTAATTATTTGGAATA
TCCATCCGTTGGCAGCCTATGGCCCTTTTAGTGCAGGTATCTACGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_h13.g1 MSMg01no365_h13.g1 CHROMAT_FILE:
MSMg01no365_h13.g1 PHD_FILE: MSMg01no365_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:59 2005
         (555 letters)



>mm_chr12_119181361_119182314
          Length = 954

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%), Gaps = 2/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagagggtcttactcaagactccttcagacaggcctacagttaaacatgacacaatt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagagggtcttactcaagactccgtcagacaggcctacagttaaacatgacacaatt 260

                                                                       
Query: 61  attccaccaccaacataacatttagtaactgcaaaccagctgacaaggcaaggtttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccaccaccaacataacatttagtaactgcaaaccagctgacaaggcaaggtttttat 320

                                                                       
Query: 121 taatgttaccaccactgtgaggagagccagtcattataaaacaaatgtcaacaaaaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgttaccaccactgtgaggagagccagtcattataaaacaaatgtcaacaaaaggtt 380

                                                                       
Query: 181 gtctcctttttactgtattagtttggtaaaatgaaaatttatatcagataggtaatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcctttttactgtattagtttggtaaaatgaaaatttatatcagataggtaatacat 440

                                                                       
Query: 241 ctgttagccaatattaggtctctttctaagacagactattgttaaaagaatatatgggga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ctgttagccaatattaggtctctttctaa-acagactattgttaaaagaatatatgggga 499

                                                                       
Query: 301 gcaaattcaggaagaagtaaaaattatctttaaaaaatatttatatcctgagaaacaaac 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcaaatgcaggaagaagtaaaaattatctttaaaaaatatttatatcctgagaaacaaac 559

                                                                       
Query: 361 gagcattcatcttgctgtgaggttactctgggcaagattcaagttcagagccgacttcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagcattcatcttgctgtgaggttactctgggcaagattcaagttcagagccgacttcca 619

                                                                       
Query: 421 tgatacttgtggggatttgaaagattaaagtgatataattttataaagatgcttcacggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgatacttgtggggatttgaaagattaaagtgatataattttataaagatgcttcacggt 679

                                                                       
Query: 481 tcagcaacttctttgatatgtaagccagtaaatttgctttggggaaaaaaaa-tacatgt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 tcagcaacttctttgatatgtaagccagtaaatttgctttggggaaaaaaaaatacatgt 739

                           
Query: 540 tgataaatcttcccag 555
           ||||||||||||||||
Sbjct: 740 tgataaatcttcccag 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space:   514480
Effective search space used:   514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)