BAC Information

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BAC

Clone NameMSMg01-366B01
Chromosome12 (Build37)
Map Location 25,852,256 - 26,044,609
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366B01.T7 (MSMg01no366_b01.b1)MSMg01-366B01.TJ (MSMg01no366_b01.g1)
ACCAG473871AG473872
length757727
length of high quality
(start - end)		373 (54 - 426)534 (84 - 617)
definitionCHROMAT_FILE: MSMg01no366_b01.b1 PHD_FILE: MSMg01no366_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:47 2005CHROMAT_FILE: MSMg01no366_b01.g1 PHD_FILE: MSMg01no366_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,852,256 - 25,852,625)(26,044,076 - 26,044,609)
sequence
NNNTTTGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTACAACATGGAAAGCGTGTTTATTATTCTTTTACTT
GACAAGGAACCAGAGGCTACAGGTGCCAGATGCCCCGGCTATAGTGAGAA
CACAGATCACAACCACGTCTGTCTTGTTTGCTGCTTGTGCCTGGTCCACC
AAATAGCAGATACTCAGGATACATGTTCTGAATGAGTAGGGCATCCATAC
AGGCTGGAAGCTGGGACTCACAGCGTGGGTCTTGTTTGGATTGGGGGGGG
GAGGGTACAGTGAGAGTCAGGATGAGAAATATGAGGCACCTAACCAGAGG
CAGATGGTTGCCAATCTACAAGCTGGCCAGAGTCCTGTGGGGCATTGCTC
TGCCATAGGCTGTGCGCTTGGCTGACCTGAGGGTTTTAAAGGAAAGAAAT
CAAGATGGTGTGTTTGCTTACCAAACATTTACTTACCTTGTGTCTGTCCT
GTTTGCAACTCCTTCAAGGTCATTATGATGTTCTGCAGCGCGCCCCGGGT
CTAGCGTGAGATCTCTTGCACGCCCGCGGCTTTATACTGCCCTAATCTTC
CTTTAGAGTCCGGTGCTCCAGCCTTTAGCTATCTACCTGTCTTTTCCAGT
TCTTTTTCTTTTTAGCCCTATCTCTCTGTAGATCCTCCCTTTTTTTTCCT
GCACCTTTATCCCCCTTTTCCTCCCTACACTTGCCTTTCATTCTCTCTTC
CCTTTTC

TTTGAGAGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCACAGGGTGGTCT
AGATCCAGAAAAGTGAGAAAGAACAAGCTATGTGACAGTTTATAGAAAGA
ACATGCCAGAGGGATTGAAACTACAAAAACATTCTGAGTAAGAGACCACA
TTGGGCATATTCAAAACATCTTCAGAGTCAAACATGAAAGAACACACAAA
AATCTCCAGGATAATCAGGGGTGAAACAGCCTAGCAGCAGATTGCTCAGG
GACTCACTCAAGAGCAGAAAGAGAAATTCACACCAAAGCCATGCAGGGAA
CTATTTTAAGTGATATAGAAATAATCACCTACATTTCAATTATTTGGCCA
GTGCTCCTGAGAAACCAACAACCCTATTCCAACTTCTGCCCTTAGTGAAA
TCAACACCAATGCCATATTGGCTATGTGGAGGTAGAGGGGGCTGTTGGGA
CATATATTCAAAATTCCTTTTTAAATAGATTTCTGATCCTCACTTTAAAA
AAAAATAGCTCTAGGTTCCCACTCAGCTTGGCATATATTAAAAATCTGTT
TGGAAGCAAACTGTTTTTTAAAGCACCTTTGGTTTTAATTAGCTTAGCAT
TTTAATTTTACGAAAGGACAGGAAGCCTCGATTATAAGTGCCTTCCCTTA
ATGTGTCTGAGTCTGCATCATGAAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_b01.b1 MSMg01no366_b01.b1 CHROMAT_FILE:
MSMg01no366_b01.b1 PHD_FILE: MSMg01no366_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:47 2005
         (373 letters)



>mm_chr12_25852054_25852826
          Length = 773

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcttacaacatggaaagcgtgtttattattcttttacttgacaaggaaccagag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcttacaacatggaaagcgtgtttattattcttttacttgacaaggaaccagag 262

                                                                       
Query: 63  gctacaggtgccagatgccccggctatagtgagaacacagatcacaaccacgtctgtctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctacaggtgccagatgccccggctatagtgagaacacagatcacaaccacgtctgtctt 322

                                                                       
Query: 123 gtttgctgcttgtgcctggtccaccaaatagcagatactcaggatacatgttctgaatga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtttgctgcttgtgcctggtccaccaaatagcagatactcaggatacatgttctgaatga 382

                                                                       
Query: 183 gtagggcatccatacaggctggaagctgggactcacagcgtgggtcttgtttggattggg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtagggcatccatacaggctggaagctgggactcacagcgtgggtcttgtttggattggg 442

                                                                       
Query: 243 ggggggagggtacagtgagagtcaggatgagaaatatgaggcacctaaccagaggcagat 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 ggggggagggtacagtgagagtcaggatgagaaacatgaggcacctaaccagaggcagat 502

                                                                       
Query: 303 ggttgccaatctacaagctggccagagtcctgtggggcattgctctgccataggctgtgc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggttgccaatctacaagctggccagagtcctgtggggcattgctctgccataggctgtgc 562

                     
Query: 363 gcttggctga 372
           ||||||||||
Sbjct: 563 gcttggctga 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_b01.g1 MSMg01no366_b01.g1 CHROMAT_FILE:
MSMg01no366_b01.g1 PHD_FILE: MSMg01no366_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:47 2005
         (534 letters)



>mm_chr12_26043876_26044809
          Length = 934

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcacagggtggtctagatccagaaaagtgagaaagaacaagctatgtgacagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cattcacagggtggtctagatccagaaaagtgagaaagaacaagctatgtgacagtttat 675

                                                                       
Query: 61  agaaagaacatgccagagggattgaaactacaaaaacattctgagtaagagaccacattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agaaagaacatgccagagggattgaaactacaaaaacattctgagtaagagaccacattg 615

                                                                       
Query: 121 ggcatattcaaaacatcttcagagtcaaacatgaaagaacacacaaaaatctccaggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggcatattcaaaacatcttcagagtcaaacatgaaagaacacacaaaaatctccaggata 555

                                                                       
Query: 181 atcaggggtgaaacagcctagcagcagattgctcagggactcactcaagagcagaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atcaggggtgaaacagcctagcagcagattgctcagggactcactcaagagcagaaagag 495

                                                                       
Query: 241 aaattcacaccaaagccatgcagggaactattttaagtgatatagaaataatcacctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaattcacaccaaagccatgcagggaactattttaagtgatatagaaataatcacctaca 435

                                                                       
Query: 301 tttcaattatttggccagtgctcctgagaaaccaacaaccctattccaacttctgccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttcaattatttggccagtgctcctgagaaaccaacaaccctattccaacttctgccctt 375

                                                                       
Query: 361 agtgaaatcaacaccaatgccatattggctatgtggaggtagagggggctgttgggacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agtgaaatcaacaccaatgccatattggctatgtggaggtagagggggctgttgggacat 315

                                                                       
Query: 421 atattcaaaattcctttttaaatagatttctgatcctcactttaaaaaaaaatagctcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atattcaaaattcctttttaaatagatttctgatcctcactttaaaaaaaaatagctcta 255

                                                                 
Query: 481 ggttcccactcagcttggcatatattaaaaatctgtttggaagcaaactgtttt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggttcccactcagcttggcatatattaaaaatctgtttggaagcaaactgtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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