BAC Information

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BAC

Clone NameMSMg01-366H24
Chromosome12 (Build37)
Map Location 99,444,730 - 99,444,958
singlet/doubletsinglet
Overlap geneGalc
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
Downstream geneGpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366H24.T7 (MSMg01no366_h24.b1)MSMg01-366H24.TJ (MSMg01no366_h24.g1)
ACCAG474198AG474199
length847829
length of high quality
(start - end)		---223 (77 - 299)
definitionCHROMAT_FILE: MSMg01no366_h24.b1 PHD_FILE: MSMg01no366_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:22 2005CHROMAT_FILE: MSMg01no366_h24.g1 PHD_FILE: MSMg01no366_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATGCAGAGNCAGCTAGCTTCCTACTNTTCCNGAGTCGCGGAATTCTC
AGNTTAGTTCTATAAACCATTTTTTATTGTTTTTTTTTGGNNGGGGAGGG
GGCTGGNNNNTNTNNCCCCCNCNNNNNNNCCCNNNNNNNNNNNNCNNCNN
NCCCCCCNNCCCNNCNNNNCCNNNNNNNCNNNCNNNCNCCNNCCNNCCCT
CCCCCNNNCNNCNNCNNCCCNCCCNNNNNCCCNCCCCCNCCCCCCNNNCC
CCCTTTTTTNCCNNCCNNNCCCCCNNNNNCCCCCCNNNCNCCNNNNNNCC
CCNCNNCCCCCCNNNCNNNTTCTCCTCCNTTCTNCNTTTCCCCNNNTCCN
CCNCCCCCCCNCNTTNNTTCCCTCCTTCTNCCCCCCCCCCCCCCTTTCTC
TCNTTTCTCTCTTTTTTCCCCCCCCCCCCCCCCCTTTTCCCNNCCCCNCN
NCCNNCCNNCCCCCTNNCCCTCCCCCCCCCCCTTCCCCCCNCCCCCCCCT
TCTCTCCCTCCCNNNCCTTNTCCCTTTCTTTCCCCCCCCTTCCCCCCCTT
NCCCCNCCTCCTTCCCCCTCCCCCCCCCCCCCCCTCTCCCCCCTTCCCCC
CCTTTCCCTTNCTTTTTCCNNCNTTCCTCCCCCCCCCCCCCTCCCCCCTN
NCCCCCCNTCCCCCTCCTCCCCCCCTCCCCCCNCTTTTCTCTCCTTTCTT
TTTTCCCCCTCTTTNTCCCCNCCCCCCTTCTCCTCCCTCCCTTTTTTCCC
CCCCNCTCCCTTTTTNCCCCCTTNTCCTCTCCCCTCTTCTCCCCCCCTTT
TTCCCTTTCCCCTTTCTCCCCATACAAGAAGGGGGAGAAATTGATTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTAAGTTGTTTATTAGTTA
GAGTTGAGGACCGAGTTGGGATGTGAGGTAGTTTATTTGACCATACTCTT
CCTAGTGCACATAATTTGCACCACTTCATAGCCACCCCTGCTGGGCATGT
GTGGATTCTGTCCGGCTTGAGCTTGCACAGGTCTCATTTGTGGTGCAACA
ATTGTTGTGATTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT
NTNNTTTNTNTGTTTTTTTTTNTTTTTTTTTTTTTCTTNTNNNTTNTTTT
TGTCTCTTTTTTTTTTTTTTTTTCTTTGCTTTCCCTTTTCGTTGGGGGCC
CCTCTCCTCCCCTTTTTTATTCCCCTCCCCCCTCCCCTCCCTTTCGTTTT
GTTACTTCCTCTTCGTTTTATTTTTCTCTCTTTATTTATTCACCACTCCG
TACTTATACATTTTTTTCCTATTTTTTCCCTCACTTTTCTTTCTTTTTTT
TTCCTTTCTTTCCCTTACCTCTTTTCACTTTCTCTTTTCCCTCCTTTTCT
TTCTCCCTTTTCCTCTCTTTCTCCTCTTTTCGCTCCCTTATCCTTTTTTT
ACTCCTTTCACTTTCTCTACTTTTTTTTTTCCCCTCTCCTTTTTTTTCTC
TTCATTTCTGTCATCCCCCCCTTACTCTTTTTTACTTATTTTTATTTTTT
TCCCTCTCTCTTTTTTTTCCCACTTCTTTTTTTTCCTTTTCTCCGCTCTC
TTTCTTCCCTCTCTTCTATTCCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_h24.g1 MSMg01no366_h24.g1 CHROMAT_FILE:
MSMg01no366_h24.g1 PHD_FILE: MSMg01no366_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:22 2005
         (223 letters)



>mm_chr12_99444570_99445192
          Length = 623

 Score =  404 bits (209), Expect = e-117
 Identities = 222/229 (96%), Gaps = 6/229 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattttaagttgtttattagttagagttgaggaccgagttgggatgtgaggtagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcattttaagttgtttattagttagagttgaggaccgagttgggatgtgaggtagtttat 330

                                                                       
Query: 61  ttgaccatactcttcctagtgcacataatttgcaccacttcatagccacccctgctgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttgaccatactcttcctagtgcacataatttgcaccacttcatagccacccctgctgggc 270

                                                                       
Query: 121 atgtgtggattctgtccggcttgagcttgcacaggtctcatttgtggtgcaacaattgtt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgcgtggattctgtccggcttgagcttgcacaggtctcatttgtggtgcaacaattgtt 210

                                                            
Query: 181 gtgatttcat--gtgtgtgtgtgtgtgtgtgt----gtgtgtatgtgtg 223
           ||||||||||  ||||||||||||||||||||    |||||||||||||
Sbjct: 209 gtgatttcatatgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgtgtg 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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