BAC Information

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BAC

Clone NameMSMg01-367C23
Chromosome12 (Build37)
Map Location 91,470,894 - 91,615,901
singlet/doubletdoublet
Overlap geneNrxn3, LOC100039498
Upstream genenone
Downstream geneLOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C23.T7 (MSMg01no367_c23.b1)MSMg01-367C23.TJ (MSMg01no367_c23.g1)
ACCAG474718AG474719
length765796
length of high quality
(start - end)		419 (18 - 436)412 (75 - 486)
definitionCHROMAT_FILE: MSMg01no367_c23.b1 PHD_FILE: MSMg01no367_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:16 2005CHROMAT_FILE: MSMg01no367_c23.g1 PHD_FILE: MSMg01no367_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,615,489 - 91,615,901)(91,470,894 - 91,471,154)
sequence
CTCCTATATCGAGAGGATCCGCGGAATTCCTTTGGTGGATCTTTTTAGAA
AAGGGATGCTAGTAGATAAAGTCATGGCTCTTCCATTTTGTATAAATACT
TTAGGGGCCAGAAAAATGTCAAAACATGGAAAGGCATTTACACACTCCTT
TATAGACTGAGTTCAATTCTCGGGACTAACCAAAAAGTGGAAGGAGAGAA
TAAGTAATTATTGCACAGAAATTTTCCACACACATGGCAGCATTGCTACC
TGGAAAGGAACTAGATTACCTGAGCAGTGTTATCTCATCTTTGTTCTCTT
TTAAGGGAAAAATACTAGCATGCTATGATTTGTACATTTTAGCAATAAAT
GAGAAATGGAAACTTCGCATCTTCTTTCCCTTTGTACTTAGTAAAGAAGA
TTATAAAGTAAACAGAGGAAAGAAAATACCATGTTTAANAACAAAAAGGA
AGAAACCAAGTTGAGTGGTAGAAGTGATCACTGGTAAGTGATAGAAGAAA
ATGGATAGAACTGCTTAGAAAATTGTATATCTTTATGGGGATTTAAAAAC
ATGCATGCCCATGGGGCTTTCCCTTTACTTACTTTACCCTAGGAGGAAAT
TAAAAATGGTTTAATAAATCTAACCCCCCCCGAAAAAAGCCGAAGAATTG
TAAGGCCCCTTTTTTTTGGGGAAAAAGGAAGTCCAAAAGGGGAAGAGGGC
CTTTGGGTAAAAAATTTTGGAGACCCCCAAAACTTAATTTGGCCCTGGGC
CCCTATATAAATGGG

NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTTG
TTTACTAGTTAGGCACAGCGAAGGCCCGCGCCATCTTATAATGGCGATTG
CTCGAGGCACACACGGCTCTCCTCAGAGATTACTGGCAGCATGCACGCGA
TTGCTCGCAGCATGTACCGGCTCTCCACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACAAACAAAGTGTTTTGAAT
CTGATACTCGCAGAGATGTTGCCTTAGTTGGCTTGTGGAAGTTTGTTATT
TAGTACTAGTGGACAGTTTCACCAATGCTTGGTCTACATTATCCAGGCAA
CCACAAACTCAGAACTTTCTGGGAATAATGCTGTTATTTCCACGATTTGT
ATATGAAGAAAGCAAGACTAAGTTATAAAATGTGTTACCAGGGAGACACA
TGGGCTTCTAAAATTCCTTTTCATCTATTATTAGAAAAATTCACTGGGCT
TTTGACAAAAAATAAGCAGAATGCTGGGGTGAGGATTCTATTTTCCGAAT
ACCATGGGTTTCCTGCCCCTGAAGGGAAATGAATCCCCGGGCTCTACCTG
GAGGCCATGAAAAGGGGAAAGAGGTTGTTCTTTTTTCTATCCCTTTTCGG
CCAATCCACTTTGTGGGTAAAACATCAGGGTTTTGTTAGTGTACTCTCCC
CCCTCTGTGGTGATAGGTTGTTGAATTTCCCCATTTCGCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c23.b1 MSMg01no367_c23.b1 CHROMAT_FILE:
MSMg01no367_c23.b1 PHD_FILE: MSMg01no367_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:16 2005
         (419 letters)



>mm_chr12_91615106_91615924
          Length = 819

 Score =  799 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctttggtggatctttttagaaaagggatgctagtagataaagtcatggctcttc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattcctttggtggatctttttagaaaagggatgctagtagataaagtcatggctcttc 737

                                                                       
Query: 67  cattttgtataaatactttaggggccagaaaaatgtcaaaacatggaaaggcatttacac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cattttgtataaatactttaggggccagaaaaatgtcaaaacatggaaaggcatttacac 677

                                                                       
Query: 127 actcctttatagactgagttcaattctcgggactaaccaaaaagtggaaggagagaataa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 actcctttatagactgagttcaattctcgggactaaccaaaaagtggaaggagagaataa 617

                                                                       
Query: 187 gtaattattgcacagaaattttccacacacatggcagcattgctacctggaaaggaacta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtaattattgcacagaaattttccacacacatggcagcattgctacctggaaaggaacta 557

                                                                       
Query: 247 gattacctgagcagtgttatctcatctttgttctcttttaagggaaaaatactagcatgc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gattacctgagcagtgttatctcatctttgttctcttttaagggaaaaatactagcatgc 497

                                                                       
Query: 307 tatgatttgtacattttagcaataaatgagaaatggaaacttcgcatcttctttcccttt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tatgatttgtacattttagcaataaatgagaaatggaaacttcgcatcttctttcccttt 437

                                                                
Query: 367 gtacttagtaaagaagattataaagtaaacagaggaaagaaaataccatgttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtacttagtaaagaagattataaagtaaacagaggaaagaaaataccatgttt 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_c23.g1 MSMg01no367_c23.g1 CHROMAT_FILE:
MSMg01no367_c23.g1 PHD_FILE: MSMg01no367_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:16 2005
         (412 letters)



>mm_chr12_91470543_91471354
          Length = 812

 Score =  451 bits (233), Expect = e-131
 Identities = 254/261 (97%)
 Strand = Plus / Plus

                                                                       
Query: 152 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaa 211
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 352 cacacacatacacacacacacacacacacacacacacacacacacacacacacacacaca 411

                                                                       
Query: 212 caaagtgttttgaatctgatactcgcagagatgttgccttagttggcttgtggaagtttg 271
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 412 caaagtgttttgaatctgatactcccagagatgttgccttagttggcttgtggaagtttg 471

                                                                       
Query: 272 ttatttagtactagtggacagtttcaccaatgcttggtctacattatccaggcaaccaca 331
           ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct: 472 ttatttagtactagtggacagctgcaccaatgcttggtctacattatccaggcaaccaga 531

                                                                       
Query: 332 aactcagaactttctgggaataatgctgttatttccacgatttgtatatgaagaaagcaa 391
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 532 aactcagaactttctgggaataatgctgttatttccatgatttgtatatgaagaaagcaa 591

                                
Query: 392 gactaagttataaaatgtgtt 412
           |||||||||||||||||||||
Sbjct: 592 gactaagttataaaatgtgtt 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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