BAC Information

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BAC

Clone NameMSMg01-367D06
Chromosome12 (Build37)
Map Location 108,474,995 - 108,655,841
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367D06.T7 (MSMg01no367_d06.b1)MSMg01-367D06.TJ (MSMg01no367_d06.g1)
ACCAG474732AG474733
length763745
length of high quality
(start - end)		524 (51 - 574)501 (56 - 556)
definitionCHROMAT_FILE: MSMg01no367_d06.b1 PHD_FILE: MSMg01no367_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:17 2005CHROMAT_FILE: MSMg01no367_d06.g1 PHD_FILE: MSMg01no367_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,655,322 - 108,655,841)(108,474,995 - 108,475,495)
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTAAGAGTGTGTCTGTTGATGATGTGTCTGCTGTGATGA
AAAAAGACAGAAGGAAAGGTGAGTAAACTCTGGAGAGTTAAACAAAAATT
CAACCCCCTTATGATACAATTTAGGTCAAAATGGTTAGGGCGTTACTAGG
AAGGACACTGATATGAAAACACCCAGGAAACCTGTTGCACAGCATATATA
CTTCAAGGTTTCGTTCCTATACAGTGAGCAATGTTATTAAATCTCTGACA
AAGAGTTAAAGCCAAGGTCACTAGGAGAAAATGTTAGGAATTGTATTTTA
ATACGTTTCTGAGTATTAAAGATGGAAATTATTTAATTGAATGTGCTCTG
ATGGCTTTCCACAAACTTGATTCTTTCCTTTTTAAATTCCTCTGCCATCA
TTCGTCCATCTCTTCTCTTTTGTTTTGATTCCACAACAGGCAGCGTAGAT
AGATGTGGAACGCTGATAAATAGTACATGCTTTTAGCAGTCGCTGCTCAA
GGGTCCAATACCTGACTTCTGCTTGTAGAGCTTTTAACACAGAAGTACTG
ATGCTTTCGGCCCTCACCAAGACAAACAGAGCTAAAGTTTTTCAATGAAG
AACAGCCGAGAGCTTTTCCTACTTTGGAATAGGATGGATTGGGATATTCC
CCCGCTTTCTGTTTTATTTCCAAAGGTTCCCGAAAATTTTTTGGATATCT
TCTTTTGGTGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCACTGTGACTTTAGGTAGACTACATATGTGGGAACAAAAGAAAGA
ACGAGAAAGGAAGATGTCAGAGAACATATTGCTTCAGGGGACTCTGTGAT
GGAGCATGAGGTAGAGTGTGCCTACAGTGATCTACTGGGAAAGCTATAAC
ACAGTAGAGTCAAGATCTCAGTAAATGAATAGAAATCATGTGTTGGGAGG
AGGCGGGGAATAAAAAGCTAACAAACAATAAATAATAAATTGTTTTCTTT
CTGAAAAATGCACCCAATGGTTATATTAAATGTAAGTAACTTACATTGTT
AATAAACAAAGGTCGTTGGACTGTGGGAATAGCTATTGCCCAGCTTGTGC
AAAGCCCTGAGTTTGGTGCCTAACGCTGAAAAGGAAAAAACAAATCCCAT
CAAATAAAGAATAAAGACATCTAAAATCCAACTAGCTAGAGACTGTCTAA
TCTACGCATTTGTCATGTGAGAATATGACATAGTATATACATGTACTTAT
AAAGATAAATAAAGGTAGAAACATTGACNATGAAACTTGCTGAAAATCCA
CTGTAATTGTATCATCATCGAACAGAATGAGGAGCAAGAAAAACAGCCCG
TTACAAGAAAGTCTGCTCCATAAGAAAGGGGGCAATTTGCCCTAAATAAA
AATTGTTAAAATAATTGCTTTAAAAAAAAAGGGCCATTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_d06.b1 MSMg01no367_d06.b1 CHROMAT_FILE:
MSMg01no367_d06.b1 PHD_FILE: MSMg01no367_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:17 2005
         (524 letters)



>mm_chr12_108655118_108656041
          Length = 924

 Score =  944 bits (488), Expect = 0.0
 Identities = 512/520 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctaagagtgtgtctgttgatgatgtgtctgctgtgatgaaaaaagacagaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattctctaagagtgtgtctgttgatgatgtgtctgctgtgatgaaaaaagacagaagg 665

                                                                       
Query: 65  aaaggtgagtaaactctggagagttaaacaaaaattcaacccccttatgatacaatttag 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 664 aaaggtgagtaaactctggagagttaaacaagaattcaacccccttatgatacaatttag 605

                                                                       
Query: 125 gtcaaaatggttagggcgttactaggaaggacactgatatgaaaacacccaggaaacctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtcaaaatggttagggcgttactaggaaggacactgatatgaaaacacccaggaaacctg 545

                                                                       
Query: 185 ttgcacagcatatatacttcaaggtttcgttcctatacagtgagcaatgttattaaatct 244
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 544 ttgcacagcatatatacttcaaggtttcattcctatacagcgagcaatgttattaaatct 485

                                                                       
Query: 245 ctgacaaagagttaaagccaaggtcactaggagaaaatgttaggaattgtattttaatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgacaaagagttaaagccaaggtcactaggagaaaatgttaggaattgtattttaatac 425

                                                                       
Query: 305 gtttctgagtattaaagatggaaattatttaattgaatgtgctctgatggctttccacaa 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 424 gtttctgagtattaaagatggaaattatttaattgaatgggctctgatggctttccacaa 365

                                                                       
Query: 365 acttgattctttcctttttaaattcctctgccatcattcgtccatctcttctcttttgtt 424
           |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 364 acttgattctgtcttttttaaattcctctgccatcattcgtctatctcttctcttttgtt 305

                                                                       
Query: 425 ttgattccacaacaggcagcgtagatagatgtggaacgctgataaatagtacatgctttt 484
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgattccacaacaggcagcgtagacagatgtggaacgctgataaatagtacatgctttt 245

                                                   
Query: 485 agcagtcgctgctcaagggtccaatacctgacttctgctt 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcagtcgctgctcaagggtccaatacctgacttctgctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_d06.g1 MSMg01no367_d06.g1 CHROMAT_FILE:
MSMg01no367_d06.g1 PHD_FILE: MSMg01no367_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:17 2005
         (501 letters)



>mm_chr12_108474795_108475695
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgtgactttaggtagactacatatgtgggaacaaaagaaagaacgagaaaggaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgtgactttaggtagactacatatgtgggaacaaaagaaagaacgagaaaggaagat 260

                                                                       
Query: 61  gtcagagaacatattgcttcaggggactctgtgatggagcatgaggtagagtgtgcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagagaacatattgcttcaggggactctgtgatggagcatgaggtagagtgtgcctac 320

                                                                       
Query: 121 agtgatctactgggaaagctataacacagtagagtcaagatctcagtaaatgaatagaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 agtgatctactgggaaagctataacacagtagagtcaagatctcagtagatgaatagaaa 380

                                                                       
Query: 181 tcatgtgttgggaggaggcggggaataaaaagctaacaaacaataaataataaattgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgtgttgggaggaggcggggaataaaaagctaacaaacaataaataataaattgttt 440

                                                                       
Query: 241 tctttctgaaaaatgcacccaatggttatattaaatgtaagtaacttacattgttaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttctgaaaaatgcacccaatggttatattaaatgtaagtaacttacattgttaataa 500

                                                                       
Query: 301 acaaaggtcgttggactgtgggaatagctattgcccagcttgtgcaaagccctgagtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaggtcgttggactgtgggaatagctattgcccagcttgtgcaaagccctgagtttg 560

                                                                       
Query: 361 gtgcctaacgctgaaaaggaaaaaacaaatcccatcaaataaagaataaagacatctaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gtgcctaacgctgaaaaggaaaaaacaaatcccatcaaataaagaataaaaacatctaaa 620

                                                                       
Query: 421 atccaactagctagagactgtctaatctacgcatttgtcatgtgagaatatgacatagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccaactagctagagactgtctaatctacgcatttgtcatgtgagaatatgacatagta 680

                                
Query: 481 tatacatgtacttataaagat 501
           |||||||||||||||||||||
Sbjct: 681 tatacatgtacttataaagat 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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