BAC Information

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BAC

Clone NameMSMg01-367F02
Chromosome12 (Build37)
Map Location 11,270,022 - 11,270,373
singlet/doubletsinglet
Overlap gene5830483C08Rik
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
Downstream geneSmc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F02.T7 (MSMg01no367_f02.b1)MSMg01-367F02.TJ (MSMg01no367_f02.g1)
ACCAG474819AG474820
length769754
length of high quality
(start - end)
414 (49 - 462)352 (44 - 395)
definitionCHROMAT_FILE: MSMg01no367_f02.b1 PHD_FILE: MSMg01no367_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:26 2005CHROMAT_FILE: MSMg01no367_f02.g1 PHD_FILE: MSMg01no367_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTCTTTCCAGCCACTAACAACTGCCAATAGCTCCTCACTAA
GGGGCTGCGCCTGGAGCTCACACTCCATCCATGCCAGAACCTTAGCTGCT
TTGATTTTGACAAGAAACTACTGGGAGTTTATGAAAGAGAGAGCTATGTC
ATATCCAGAAGATTGCATTCCTTGGTACTCCTCCACATCCTTTAGCTCTT
ACATTCTTTCCTTCTCTTCTGTGATGTTCCCTGATCCTTAGTAATGGTTA
GGTAAATATAGATGTCCCCTTTCGGGATGAGCATTAAGTCTCTTATTCTT
AGCACTTTGACCAGCCATGCATCTCTCCATTGACAGCTAACCATTGAGGG
GGAAAAAAGTCTCTCTAAGGCCAAGAGCACCCATGTCTGAGTATAAGCAG
AATATTTAGAAGACAAATTGACAACATGACCATTTAGCAAAAGTGGCTTT
GTTCATTTGGTTCATTGAGATAGGACTTCATGTAGCCAAGCTTGCCTCAA
ACTTGCCTTTGTTAACTATGATATTTATATTCCTCTTCCTCTCCCACCTA
CCTTCCATGGTATTTGGAAGTGTTAGCCTCGCCCCCCTCCTGTCTGCTTT
GTTCATGGATTTCTTCAGTTCTCTCTTATCCCTTCACATTTTTCGCTCTC
CCCCTTTCTCTCCTCCCTTTTTTTCTTGCCCCTTCTCCCTCCTTTTTCCA
TTCTCCTCCCGCTTTTTCN
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTAA
AAACTAAAGGTAGATGGCAAAAATATATGAAATCAAAAGGCCATTACTCA
TATGCAGAAACCTTCTGAGAAGTCCATGTTATACATTCGCACACAGATGC
AATGAAAGCCAGTGCTGAAAGGTTGTTGTATATCATTCCCTCAGTTTTCT
GAACCGTGATTTTATAATGCGGCCAGTCCTGCCATGAACGTTATTCTGTA
CACTCATTTTGTATAGTGTGTAAATATACGTGGTCACATTACTTTAGAAA
GAAAAATACAGAATAAACACAAGATACTAAGCAGTTAATTGGCGGCCAGT
GCTAATTTATTTGACATTAACATGTCGGCTGGCTGTAACACTATGGCAGC
TTGAGTTAATTTGAAAAGTTGTGGTGAATTCTGGATTGAACTGTTCTAAT
ACCTTTTTCTAAGACATTGTTATGAATGTAAATATCATTTGTAAAGTACT
AGTTCACACAACACATCTTTATTACCTATTTATAACCTGACCTCGAATTT
TTCCGGTTTTTTTGCCTCTTTATTTTTTGCCCAAATTTGCTTATTCTACA
ATTATTCCTTTTTATTCATCGCTTCTATATCATCTTATTATTGCTTTTTT
TATGTTTTTATTTATTCCTTTCTCTGATTTTTTTTTTTATTCAATATCTC
TTTCCACTTACTTTCCTTCTTTTTCTCTCTTATATATTCATTTTTTTTTA
TCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f02.g1 MSMg01no367_f02.g1 CHROMAT_FILE:
MSMg01no367_f02.g1 PHD_FILE: MSMg01no367_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:26 2005
         (352 letters)



>mm_chr12_11269822_11270573
          Length = 752

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctaaaaactaaaggtagatggcaaaaatatatgaaatcaaaaggccattactcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctaaaaactaaaggtagatggcaaaaatatatgaaatcaaaaggccattactcatat 260

                                                                       
Query: 61  gcagaaaccttctgagaagtccatgttatacattcgcacacagatgcaatgaaagccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaaaccttctgagaagtccatgttatacattcgcacacagatgcaatgaaagccagt 320

                                                                       
Query: 121 gctgaaaggttgttgtatatcattccctcagttttctgaaccgtgattttataatgcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgaaaggttgttgtatatcattccctcagttttctgaaccgtgattttataatgcggc 380

                                                                       
Query: 181 cagtcctgccatgaacgttattctgtacactcattttgtatagtgtgtaaatatacgtgg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cagtcctgccatgaacgttattctgtacactcattttgtaaagtgtgtaaatatacgtgg 440

                                                                       
Query: 241 tcacattactttagaaagaaaaatacagaataaacacaagatactaagcagttaattggc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 441 tcacattactttagaaagaaaaatacagaataaacataagatactaagcagttaattggg 500

                                                               
Query: 301 ggccagtgctaatttatttgacattaacatgtcggctggctgtaacactatg 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccagtgctaatttatttgacattaacatgtcggctggctgtaacactatg 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)