Query= MSMg01no367_f09.b1 MSMg01no367_f09.b1 CHROMAT_FILE:
MSMg01no367_f09.b1 PHD_FILE: MSMg01no367_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:28 2005
(500 letters)
>mm_chr12_95051042_95051940
Length = 899
Score = 890 bits (460), Expect = 0.0
Identities = 487/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctctatctgtttatttactgtacaatgacatattcctttaccccaaatttg 64
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcattctctatttgtttatttactgtacaatgacatagtcctttaccccaaatttg 264
Query: 65 agtcaagaagacaaagttaatattttatgtatgctaaatttgatataacagaagacagca 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 agtcaagaagacaaagttaatattttatgtctgctaaatttgatataacagaagacagca 324
Query: 125 gtctctcatagttgccagagtgaaagaactggaaagcaataatctgggatggaaattgca 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctctcacagttgccagagtgaaagaactggaaagcaataatctgggatggaaattgca 384
Query: 185 gagaagtatattttcagaaacatttcttattcttttctacaactatattctttttagttt 244
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 385 gagaagtatattttcagaaaca-ttctcattcttttctacaactatattctttttagttt 443
Query: 245 ctaaataaaaaactaagtcctctttagctgccatttagccagaatgcagttagagtgtaa 304
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 444 ctaaataaaaaactaagtcctttttagctgccattgagccagaatccagttagagtgtaa 503
Query: 305 gctaacagcctcataaataacatcctcttagctttccagtcacaccattccaattctgta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctaacagcctcataaataacatcctcttagctttccagtcacaccattccaattctgta 563
Query: 365 ttttgtcagcaaaagtcctgtttttaaaaataatactttggccatctgcttgcacatatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttgtcagcaaaagtcctgtttttaaaaataatactttggccatctgcttgcacatatg 623
Query: 425 tgctacacatcactgagtgttagattctctccaagttttatagatggtaccacaaccttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgctacacatcactgagtgttagattctctccaagttttatagatggtaccacaaccttg 683
Query: 485 aatgtgttttctctca 500
||||||||||||||||
Sbjct: 684 aatgtgttttctctca 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_f09.g1 MSMg01no367_f09.g1 CHROMAT_FILE:
MSMg01no367_f09.g1 PHD_FILE: MSMg01no367_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:28 2005
(528 letters)
>mm_chr12_95214279_95215206
Length = 928
Score = 936 bits (484), Expect = 0.0
Identities = 517/528 (97%)
Strand = Plus / Minus
Query: 1 tgtgattgaaatttaataaatgttaacagtggaagtggagggaattttagattgaaatag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 834 tgtgattgaaatttaataaatgttaacagtggaagtggaaggaattttagattgaaatag 775
Query: 61 tttaaaccattaaataaaaaatagtttaaaacattaaaatttaaaagagcacaaatcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tttaaaccattaaataaaaaatagtttaaaacattaaaatttaaaagagcacaaatcatt 715
Query: 121 tccactaatactatttttgctatgcttatttaagtttttaaaatgtacctgacatatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tccactaatactatttttgctatgcttatttaagtttttaaaatgtacctgacatatcca 655
Query: 181 tcaatcactgataagcattgacgaactgttgaaatgacgcattttgtcatctagaagctg 240
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 654 tcaatcactgataagcattgacgaattgttgaaatgacgcatttagtcatctagaagctg 595
Query: 241 ctcaagtgcctcgcgtgctgctacctgggactcctgaaatgcagatgtcaatgtagcacc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctcaagtgcctcgtgtgctgctacctgggactcctgaaatgcagatgtcaatgtagcacc 535
Query: 301 tcacagggtggattggctcagtttaaacataactgagaaatcccattgggaagtactaac 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcacagagtggattggctcagtttaaacataactgagaaatcccattgggaagtactaac 475
Query: 361 tgtgaacagcagagagtgaaatcctgctttccacatcaaatattgagattggtgccggca 420
||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| | |
Sbjct: 474 tgtgaacagtagagagtgaaatcctgctttcgacataaaatattgagattggtgccagta 415
Query: 421 cttcataaattctgtaggtgacatcttaattgttgaaatttttcacaagcaagttcatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 414 cttcataaattctgtaggtgacatcttaattgttgaaatttttcacaagcaagttcaggc 355
Query: 481 tttttcagatctctgctcattgagacttaaaggagggaggtaaaagcc 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttttcagatctctgctcattgagacttaaaggagggaggtaaaagcc 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
