BAC Information

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BAC

Clone NameMSMg01-368K17
Chromosome12 (Build37)
Map Location 99,051,452 - 99,051,973
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368K17.T7 (MSMg01no368_k17.b1)MSMg01-368K17.TJ (MSMg01no368_k17.g1)
ACCAG475839AG475840
length741764
length of high quality
(start - end)		522 (62 - 583)463 (73 - 535)
definitionCHROMAT_FILE: MSMg01no368_k17.b1 PHD_FILE: MSMg01no368_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:10 2005CHROMAT_FILE: MSMg01no368_k17.g1 PHD_FILE: MSMg01no368_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTTGCTCTCCAAATTAATCTTTATTCTAGTCCTTACTTCCACTGATTGAC
TGAAGGCCACCCAACTGTGCAAGAAAATGTTCTTTTTACTTAAAATTGAC
CACTTTAAATGTTAATCTCATCCAAAACAACTGAATAACGTTTGTTCAAA
TATCTGCACTATAGCCTAGCCATGTTGACATGAAATTAACCATTATGCTG
ATCTTTTCACTTTCAAAGAACAAAAAGAAAATGCTTTTGTTGGAAAATGA
GCTAGGAGGAGATTATTACAATGTGAAGAAATAAGAGTGTCAGAGATAAG
ATGTGGGCATGGCTGGCACAATGAGGATTAGAGCCATACTTTAATAGTGA
TAGAAAGCTACTGATATCACAGTGTGAGAGACAAGCCAATTCACTTGGCT
CCTAAGACACTGATGGGGATAAAGGGGTCCCTGCAACAAAGCAGCCTAAA
AGCTTCCAGGACACAGTGATGCTGTTACGATCTAAAGATGTGGATCAGAA
GCAGTGAGCAAGGTTGAGATTCCACATCGATTTGGAGAGCAGACGTGATA
GGACTTGTGGTTGATTGTACCTGGTGNTGAAGAANGAAGAATCAAAGTCT
ATTCTGATGTTGCTGGAGTTCTTCAAGAAACACCTCAAACATCGCTCAGC
AAAGCTCTCCCTGATTTCATCACCCTTTGCTTTTGTGCACN

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCCTTCTGTTGAGAGATACCTAGGTTT
TTCCAATTTCTGACTATTATGAATAGAGCACCAACAAACATGGCTGAGCA
AGTGTCTCTGTGGTAGGATAGAGCATCCTTGGCTATATGCCCAAGAGTGG
TATAGCTTAATCTTGATCTTGAGGTAGATTGACTTCTTTCTTCCTGAGGA
ACCACCACACTGATGTCCATAGTGACTGTCGAAGTTTGTAATCCCATCCG
GAAAGGACAAGTGCTCACCTTGCTCCACATCCTCACCAGCACGACCTATC
ACTACTTTATTGATCTTAGCCATTCTGACAGGTGGAGCATGAACTCTCAA
AGCAGTTTTGACTCACAATTGCCTGATGGCTAAGGATATTGAACATGTCT
TTAAATGTTTCTCAGCCATTTAAGTTTTGTCTTTTGAGAATTCTGTTTAG
ATAAGTACCTTATCTTTTTTTTACTGGATTATTTGTTTTCTTGATATCTA
GAATCTTTTTTAGTTTTTTTAATATATATTTTCGTTATGGGGATTAGTCC
TCTATCCTACCCGGGGGTGGGAAAAATCTTTTAACCTTTCTGAAATTGCT
GTTTTGCCCCCTGAAGGGTCCTTTGTTTTCTAAAAGGTTCCCTTCTTGAA
GGCCCCTTTTTTTTTTTTTTTTTAAAACCCTTCAATTAAAATTTTTTTTT
TATTTTTGGAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_k17.b1 MSMg01no368_k17.b1 CHROMAT_FILE:
MSMg01no368_k17.b1 PHD_FILE: MSMg01no368_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:10 2005
         (522 letters)



>mm_chr12_99051252_99052173
          Length = 922

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaatctttattctagtccttacttccactgattgactgaaggccacccaactgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaatctttattctagtccttacttccactgattgactgaaggccacccaactgtgca 260

                                                                       
Query: 61  agaaaatgttctttttacttaaaattgaccactttaaatgttaatctcatccaaaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaatgttctttttacttaaaattgaccactttaaatgttaatctcatccaaaacaac 320

                                                                       
Query: 121 tgaataacgtttgttcaaatatctgcactatagcctagccatgttgacatgaaattaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaataacgtttgttcaaatatctgcactatagcctagccatgttgacatgaaattaacc 380

                                                                       
Query: 181 attatgctgatcttttcactttcaaagaacaaaaagaaaatgcttttgttggaaaatgag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 attatgctgatcttttcactttcaaagaacaaaaagaaaatgcttttgttggaaaaggag 440

                                                                       
Query: 241 ctaggaggagattattacaatgtgaagaaataagagtgtcagagataagatgtgggcatg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggaggagattagtacaatgtgaagaaataagagtgtcagagataagatgtgggcatg 500

                                                                       
Query: 301 gctggcacaatgaggattagagccatactttaatagtgatagaaagctactgatatcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggcacaatgaggattagagccatactttaatagtgatagaaagctactgatatcaca 560

                                                                       
Query: 361 gtgtgagagacaagccaattcacttggctcctaagacactgatggggataaaggggtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgagagacaagccaattcacttggctcctaagacactgatggggataaaggggtccc 620

                                                                       
Query: 421 tgcaacaaagcagcctaaaagcttccaggacacagtgatgctgttacgatctaaagatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tgcaacaaagcagcctaaaagcttccaggacacagtgatgctgttacgacctaaagatgt 680

                                                     
Query: 481 ggatcagaagcagtgagcaaggttgagattccacatcgattt 522
           |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ggatcagaagcagtgagcaaggttcagattccacatcgattt 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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