Query= MSMg01no368_n07.b1 MSMg01no368_n07.b1 CHROMAT_FILE:
MSMg01no368_n07.b1 PHD_FILE: MSMg01no368_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:23 2005
(238 letters)
>mm_chr12_111640553_111641190
Length = 638
Score = 445 bits (230), Expect = e-129
Identities = 236/238 (99%)
Strand = Plus / Plus
Query: 1 caggatacagggaatggccatcctccccacagcctgctctgccgaggacactgtacttct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacacagggaatggccatcctccccacagcctgctctgccgaggacactgtacttct 260
Query: 61 tgccatgaggtgaccatcagctgtcctgctcagaagctcagagagaggtacaactgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccatgaggtgaccatcagctgtcctgctcagaagctcagagagaggtacaactgcaca 320
Query: 121 gatggccccacacctgagatgacacttcagtctctaaccctgtaacaaaaccccacctca 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggccccacgcctgagatgacacttcagtctctaaccctgtaacaaaaccccacctca 380
Query: 181 cactcgagatcactgggaagagcttccgacagcagcccaagtggacagagtgtgacaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactcgagatcactgggaagagcttccgacagcagcccaagtggacagagtgtgacaa 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no368_n07.g1 MSMg01no368_n07.g1 CHROMAT_FILE:
MSMg01no368_n07.g1 PHD_FILE: MSMg01no368_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:23 2005
(512 letters)
>mm_chr12_111817765_111818679
Length = 915
Score = 872 bits (451), Expect = 0.0
Identities = 498/515 (96%), Gaps = 3/515 (0%)
Strand = Plus / Minus
Query: 1 tccaggtgttagactcccctaagtacctccctctctcacaagacatcaccaatatcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tccaggtgttagactcccctaagtacctccctctctcacaagacatcaccaatatcactt 539
Query: 61 catgaccccgtgtctgttagacatttcagaaagaagacactgttttttaaaaaagggaaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 catgaccccatgtctgttagacatttcagaaagaagacactgttttttaaaaaagggaaa 479
Query: 121 acagaacgagaaacaaactagatttaaaactgtaagagagctaaaatgtctacaagaaat 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acagaatgagaaacaaactagatttaaaactgtaagagagctaaaatgtctacaagaaat 419
Query: 181 tctaaaagtttttttttttttt---caagaccaggtgttaaatgtgtcacacagctggaa 237
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 418 tctaaaagttttttttttttttttgcaataccaggtgttaaatgtgtcacacagctggaa 359
Query: 238 aaaaaaatgtttttttaaaagtcatttgacttggaagtttctaatattgagtctaagaaa 297
|||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaaaaaatgtactcagaaaagttatttgacttggaagtttctaatattgagtctaagaaa 299
Query: 298 taaaacattccttgtcttttccattctctttctgaagtttaggacccccactttagcagg 357
||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 298 taaaacattccttttcttttccattctctttctgaagtttaggaatctcactttagcagg 239
Query: 358 atttagactgtgtgcgcgcatgtgcacatatgtacatgttttgagacaggatctcattat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atttagactgtgtgcgcgcatgtgcacatatgtacatgttttgagacaggatctcattat 179
Query: 418 gtagcccaggctggccttgccctcatggcagtccttcggccttagcctcccaggtgctgg 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 178 gtagcccaggctggccttgccctcatggcagtccttcggccttagccccccaggtgctgg 119
Query: 478 gttatgaacaccaggcagcacacctggggatttaa 512
|||||||||||||||||||||||||||||||||||
Sbjct: 118 gttatgaacaccaggcagcacacctggggatttaa 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 915
Length adjustment: 10
Effective length of query: 502
Effective length of database: 905
Effective search space: 454310
Effective search space used: 454310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
