BAC Information

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BAC

Clone NameMSMg01-368N14
Chromosome12 (Build37)
Map Location 81,267,707 - 81,268,147
singlet/doubletsinglet
Overlap genenone
Upstream geneVti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
Downstream geneActn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368N14.T7 (MSMg01no368_n14.b1)MSMg01-368N14.TJ (MSMg01no368_n14.g1)
ACCAG475977AG475978
length745749
length of high quality
(start - end)		534 (70 - 603)441 (69 - 509)
definitionCHROMAT_FILE: MSMg01no368_n14.b1 PHD_FILE: MSMg01no368_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:24 2005CHROMAT_FILE: MSMg01no368_n14.g1 PHD_FILE: MSMg01no368_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTTCTTCCTTGAGAAGATGGCTCACAAGTGGTTGCCACCCATGCA
CGCACGCATTATGGACCTGAGTCTGGATTTCTCAAGACCCACACGAGGAA
GCCACCCCACACATGGCATGGATGGTCTGTTATCCCAGTGCTGTGGAGGT
AGAGACCACAGGAGTGCTGGGTGGCTTGGTAGTAAAGAGTGAGTACTGTT
TCTAGAGGACCTGAGTTCTCCACACATGGCCTGAGATGCAAGGACCCCTT
CTGGCCTCTTTGGGTACCTATCCTTATGCACACATGCACACACACATACT
TGGTTTTGTTTGCTTATTGTTTTTAAGTGTATGGATGGTTTGCCTGCATG
TATATACCATGGCCATGCTTGGTGCCTTCAGAGGCCAGAAGAGGGTATTG
CATCCCTGACAATGTAGTTACAACAGATTGTGAGTCACCATGTGGGTACT
GGGAATTGAACTCAGGTCCTCTGGAAGAACAGTCAGGGCTCTTAACCACT
GAGCCATCTCTCTAGGCCTTATACTTTAAAAAAAAAAAAACTTAAAAAAT
ATAACATGGAGAGCAACTGAGGAAGACATCAAAGATCAACTTCTGGCTTC
TATATGTGTGCACACATTCCCCGGTCCCCCCTCCCTAAATAAATTTAAAT
CTCCTTCCACTATTGTCTTGAAATTTATTTTTATTTCCATCAGGG

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCCCTAGAGACCCCAAAATGTGCCACAGAT
AGTAGCTGTTGGTCATTGCAGGGACTCAATGACAATGCAGATTGCCAGCA
CTCCCCCCATATCCAAACATATATGATGATAAGCTCCAATTTATCATTTG
TTGTCTAAGAATATATGGTGATGGTGGGAGCCTGTTGTTAGAATTTCCAA
GACTACAGAGCAGAGCAAGAGTGATCATGGTTAAAATAACTTTGCAAGTA
GAGATATGTCGAGTTGTTTAGTTCTGCCTGGGGGTGGTTTTAAAATCCCT
GGCTGTGCCTCCTGAAAATGGTGGGCTGGCTCTTTGCCAGGTTCCCATTC
ATTAAGTGGCGCTGTTATAAAGTGATGGTAAATGGGTATGGAGCATGAGT
GTTGGCTGTGGCCAATCTAAAGATTCTGTTCAGAAGGGAGAATCACTTGA
AAGTAGGTCAATGTGTAGGCCCCTACCGCCAAGCCTGAATGCCCAAGTTT
GATCCCTGAGACCCACACGGTAAAAAGAACCAGCTCTCAAAAGTGGTCAT
TCTGACACGTGGATGTTGCCATTCATGTTCGCACTCACTTAAGAAAATCT
TTTAAGATTCTTTTTCTTTGAANNAGGTAAATCCCTACAATTATCTGCCT
CTACGGGGGTATACAAGTCTCTTAACATTCTTGGCCTTAATCATAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_n14.g1 MSMg01no368_n14.g1 CHROMAT_FILE:
MSMg01no368_n14.g1 PHD_FILE: MSMg01no368_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:25 2005
         (441 letters)



>mm_chr12_81267507_81268347
          Length = 841

 Score =  783 bits (405), Expect = 0.0
 Identities = 432/441 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccctagagaccccaaaatgtgccacagatagtagctgttggtcattgcagggactca 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatcccttgagaccccaaaatgtgccacagatagtagctgttggtcattgcagggactca 582

                                                                       
Query: 61  atgacaatgcagattgccagcactccccccatatccaaacatatatgatgataagctcca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgacaatgcagattgccagcattccccccatatccaaacatatatgatgataagctcca 522

                                                                       
Query: 121 atttatcatttgttgtctaagaatatatggtgatggtgggagcctgttgttagaatttcc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 521 atttatcatttgttgtctaagaatatatggtggtggtgggagcctgttgttagaatttcc 462

                                                                       
Query: 181 aagactacagagcagagcaagagtgatcatggttaaaataactttgcaagtagagatatg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 461 aagactacagagcagagcaagagcgatcatggttaaaataactttgcaagtagagatatg 402

                                                                       
Query: 241 tcgagttgtttagttctgcctgggggtggttttaaaatccctggctgtgcctcctgaaaa 300
           ||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 401 tcgagttggggagttctgcctgggggcggttttaaaatccctggctgtgcctcctgaaaa 342

                                                                       
Query: 301 tggtgggctggctctttgccaggttcccattcattaagtggcgctgttataaagtgatgg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 tggtgggctggctctttgccaggttcccattcattaagtggtgctgttataaagtgatgg 282

                                                                       
Query: 361 taaatgggtatggagcatgagtgttggctgtggccaatctaaagattctgttcagaaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaatgggtatggagcatgagtgttggctgtggccaatctaaagattctgttcagaaggg 222

                                
Query: 421 agaatcacttgaaagtaggtc 441
           |||||||||||||||||||||
Sbjct: 221 agaatcacttgaaagtaggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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