Query= MSMg01no369_a04.b1 MSMg01no369_a04.b1 CHROMAT_FILE:
MSMg01no369_a04.b1 PHD_FILE: MSMg01no369_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:37 2005
(284 letters)
>mm_chr12_87567133_87567816
Length = 684
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%)
Strand = Plus / Plus
Query: 1 aataatatgcatgacaactgactgatgggtacagaacatgccacttaaaaacaacggcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatatgcatgacaactgactgatgggtacagaacatgccacttaaaaacaacggcac 260
Query: 61 tgtgtccacagaggaaacagcagtggctgccaccattgctaccgcctccactgctgccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtccacagaggaaacagcagtggctgccaccattgctaccgcctccactgctgccac 320
Query: 121 agtcaccgccattgcctccgctgccgctgctgccaccaccaccatagaagctacatagcc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaccgccattgcctccgctgccgctgctgccaccaccaccatagaagctacatagcc 380
Query: 181 ctctcacctctccttgaaatgggctgtaaacatagctgatcttgtcctgaaaaacagatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcacctctccttgaaatgggctgtaaacatagctgatcttgtcctgaaaaacagatc 440
Query: 241 tgaagactttcattccataagttacctcttttttttttttttt 283
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgaagactttcattccagaagttacctcttttttttttttttt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_a04.g1 MSMg01no369_a04.g1 CHROMAT_FILE:
MSMg01no369_a04.g1 PHD_FILE: MSMg01no369_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:37 2005
(356 letters)
>mm_chr12_87717812_87718561
Length = 750
Score = 638 bits (330), Expect = 0.0
Identities = 347/356 (97%), Gaps = 6/356 (1%)
Strand = Plus / Minus
Query: 1 cacccaacatcattctttgcattttgaggtcctctgcctctgtgcttgctctccatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cacccaacatcattctttgcattttgaggtcctctgcctctgtgcttgctctccatacac 491
Query: 61 acacattcgctactttgctgcgtgagacagctccaggtagataaagcaaacccgacctta 120
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 490 acacattcgccactttgctgcgtgagacagctccgggtagataaagcaaacccgacctta 431
Query: 121 ctcctcacacttttgcccaacacatcttctaactcagaagccaggcttgaggccatagat 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 430 ctcctcacacttttgcccaacacatct------tcagaagccaggcttgaggccatagat 377
Query: 181 ggtccagctcttcatgaaatggaaacacgaggaggtgagtggttccctcacctatgttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtccagctcttcatgaaatggaaacacgaggaggtgagtggttccctcacctatgttga 317
Query: 241 ctctaaattgtaccaacctggagagtgacagaaattcagattctagaagggtataagtga 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctctaaattggaccaacctggagagtgacagaaattcagattctagaagggtataagtga 257
Query: 301 atgtgaaaggaaagaagccacgataggtcacttctcatcctctgcctaaatgtaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtgaaaggaaagaagccacgataggtcacttctcatcctctgcctaaatgtaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 750
Length adjustment: 9
Effective length of query: 347
Effective length of database: 741
Effective search space: 257127
Effective search space used: 257127
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
