BAC Information

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BAC

Clone NameMSMg01-369J17
Chromosome12 (Build37)
Map Location 118,704,266 - 118,704,729
singlet/doubletsinglet
Overlap genenone
Upstream geneRnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
Downstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J17.T7 (MSMg01no369_j17.b1)MSMg01-369J17.TJ (MSMg01no369_j17.g1)
ACCAG476551AG476552
length733743
length of high quality
(start - end)
470 (40 - 509)457 (71 - 527)
definitionCHROMAT_FILE: MSMg01no369_j17.b1 PHD_FILE: MSMg01no369_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005CHROMAT_FILE: MSMg01no369_j17.g1 PHD_FILE: MSMg01no369_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGACACCTACTTGACC
GTATATAAGCAGGGATCACCCTGGCTTGGAGAGGAGCTCTGAGAGAAGGG
GTGTCTGAGAGCAGCGAACAAACAGCTCCAAGCCAAACCACAGGTCCAAG
CTGGCAGCGGCCTGTGCTCTGCTTTCTCTGTAGACTTCCAGACAGCTCTC
TATTCTGCTCGATCCAGTTCTCTAAACAGCAATCCCTTCCTATCCTAACA
ATCCTCTCGATAGCTCATCTCCTGCAGATCATAGGCCCAGTCTTTCATTT
TACTTACCAATCCAGTCATTTATTCCAGGTTTCATTATGCTTATTCTATG
AATCTGCATCCTGTGACTGCAGCCCCTTAATTCTTAAGAGACAGCAAGCA
CACATTTTCTTTTAACACTGCAAAAGAATTCAGAGATCTGCCTGCCTCTG
TTAAGCTGGGTGGGGCCCCATCTTGAAATTACCATTTCTACCACACCTGG
GTTTAGGAATCTGCCTGCCTTTATAAGCTTAAACAAAACAAAACCAACTA
AAGAAAAAAGATTACCTAGGTGAAATCTGGCATCCCCATTTCCTAAATCC
CCTTATCCTCCCTTGGAACCTTTCCGGAATGCTCGCTCCCTGCCCAGCCT
GGTTTTGGTCCCCTACATTCCAGAAGCCCCCTACCTAACTCTATTTGCCT
CCCTAATTTTCCCAAAATATCTCTTCGGACCCC
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTGTAAAGTTATAAGAATAGAGTTAAAG
CAGGCCACAGTGTTACATGCCTGTAATAAGAGTACTCTGGAGGCACATGT
AAGAGGATTTTGAGTTTGAAGCTAGCCTGAGCTATGTAATGAGATCCTGT
CTCAAAAGCAAGCAAACAAACCTAAAGACAGAAAGAGAAATAAAAAGTAC
CCATCCTCAGATTGGATTTGAGAAGTTAATTTTTTTTTTAACTTTTCTTT
TTTTTTTTTTCCTCAAAACTTCTTGGCACAGGATAATGGGGTAAGCCACA
GAAATAGTCTCCTACATGTTCCTGAACCACATGTTCCTGTTGAGTATCTG
TGGCTCACCCGACTTTGTTGACGACTCTCTCATCTCAGTTCCAGATAGTC
CTGGAGAGCCACATCAGCACTTCAACCACGCCTGTAGCTTCTGCAGACGT
CTTGGCTGCAGCCTGCCTGGCTCAGTCTCTTTAGCACTCAGAAGTAAGTA
CCTCTGAACTTGCCTGGCTGTAAGTAGATCAGCAACAGTACCCACGACTC
CCTAACCTCATTCTCGCCTGGCTTTTCCTTTCAAATGGTTACCCCCTTTG
GGCTTTTACTTTCCCTGGGACTTAAGCCCCCTTTCCAGACCTTTGTTCCA
TCACGAGGTTGATTTTTTTTCTTCCTCAAGGACCCAAATTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j17.g1 MSMg01no369_j17.g1 CHROMAT_FILE:
MSMg01no369_j17.g1 PHD_FILE: MSMg01no369_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:23 2005
         (457 letters)



>mm_chr12_118704073_118704929
          Length = 857

 Score =  833 bits (431), Expect = 0.0
 Identities = 453/465 (97%), Gaps = 9/465 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtaaagttataagaatagagttaaagcaggccacagtgttacatgcctgtaataag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 194 atttgtaaagttataagaatagagttaaagcaggacacagtgttacatgcctgtaataag 253

                                                                       
Query: 61  agtactctggaggcacatgtaagaggattttgagtttgaagctagcctgagctatgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agtactctggaggcacatgtaagaggattttgagtttgaagctagcctgagctatgtaat 313

                                                                       
Query: 121 gagatcctgtctcaaaagcaagcaaacaaacctaaagacagaaagagaaataaaaagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagatcctgtctcaaaagcaagcaaacaaacctaaagacagaaagagaaataaaaagtac 373

                                                                       
Query: 181 ccatcctcagattggatttgagaagttaattttttttttaacttttcttttttttttttt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 ccatcctcagattggatttgagaagttaattttttttt-aacttttcttttttttttttt 432

                                                                       
Query: 241 cctcaaaacttcttggcacaggataatggggtaagccacagaaatagtctcctacatgtt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 433 cctcaaaacttcttggcacaggataatggggtaagccacagaaatagtctcccacatgtt 492

                                                                       
Query: 301 cctgaaccacatgttcctgttga--------gtatctgtggctcacccgactttgttgac 352
           |||||||||||||||||||||||        ||||| |||||||||||||||||||||||
Sbjct: 493 cctgaaccacatgttcctgttgaagtcaggagtatccgtggctcacccgactttgttgac 552

                                                                       
Query: 353 gactctctcatctcagttccagatagtcctggagagccacatcagcacttcaaccacgcc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gactctctcatctcagttccagatagtcctggagagccacatcagcacttcaaccacgcc 612

                                                        
Query: 413 tgtagcttctgcagacgtcttggctgcagcctgcctggctcagtc 457
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgtagcttctgcagacgtcttggctgcagcctgcctggctcagtc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)