CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGTTTGAGGCAATACAGTGTGGAATACCACGATAGTGGATAA
GGCATTCTGTAAATCCACGGATCATGGTTTTGGAAGAATCATTATGTGCA
ATAAAGGCAAATCCACAACCAGAATAAGTATCTATTTCAAATACCAAACA
TATTGTTATTCCATTTTGAATTCTACATTCATTGTAGAACTAAGCAAGAA
AGATGAGAGACAAAAGATAGACAGTGAGTATTGTGATTGGATGGTAAGGG
ATATTTTCATATCATGTGGCTTCATTGTTGCTTTTCTTATAAATGGCAGA
AATTAGGAAGAGAAAAAGGGGAAGAATTCAACACAAACTACATGCATCAA
AGGGAATAAATTAGAAAATATCTGCAAAGCGTTGGCAAAATTTGACATCT
TCTTTTGCCTGTGATGATAAACAAGATAATTAATTCTGTCTTCATCTTTT
AAGTGAGGATATGAACTCTGAGATTGGATTATAATGCATGTATACTGTAC
ATTACATTATGCAGATAGCTGCACTAAGACGATTCATGTACTAACACTGT
CACTTTCTGTGTCTTGAACAGATCATACTTTTTATCAAGTCCGTGCCAAA
AATTTTTGGTAGCCCTTGTTATTCCTTCTTCTACAACTCTTGGGGCCTTT
TTCATCCTCCCTTTTTCCTTCCCCCTCN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTATCTCTGTACCTCATTTT
TAACAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTGTGTAT
ATATTGGATATTAGCCCTCTATTGGATGTAGGGTTGGTAGTGAAAGGAAA
TAAAATTTGAGACCTGTGATTCATGTAATTTATGTCAAATAGCCCAAAGA
GTTGTTTGTGAGCTTTGAAACCTGGGGCTGAAAACATAGCAGAACAGGCC
AGGACATGCCCGGGCAGGCCCGTCATTATATGTCCTGACTGGCCTAGTGC
CTCCCTATCTCCCGCCTTTCTGACAGCCTGTTGATGTTTAAATGGACCAA
TCATGCGATACTGCGTTCATTCCTCTTCCAGTCTCCACTCCCTTTTCTAT
ACAAACCCCTAGTTTTTATGCTGTCGTTTCCCCCACCTTCTGTCTCTTGT
GTCATATTTCGCTCCAATCCTTACTCCCCGCCCTCTCTTTTTTTCTTGTG
TCCCTTCAACCCATTGTTTTTTTTGTCTTATCATCTTTCTCCCTCTCCTT
TTTCTTTTTCTATCTTTACCCTCTTCATCCCTTATTCATTTTATTGCCAG
CTCCTTATTGACCAACTCTCTCTCTCTTCTTTCTGTTCTACCACATTCTT
TTTTTCTTCCTTCTCCATCTGTTATATTATGTCCCTTCCCATCCTATCCT
CTCCTTACTCCCTGTTTTCTCTACTC

Query= MSMg01no370_j01.b1 MSMg01no370_j01.b1 CHROMAT_FILE:
MSMg01no370_j01.b1 PHD_FILE: MSMg01no370_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:40 2005
         (486 letters)



>mm_chr12_39173544_39174429
          Length = 886

 Score =  901 bits (466), Expect = 0.0
 Identities = 478/482 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttggtttgaggcaatacagtgtggaataccacgatagtggataaggcattctg 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccttggtttgaggcaatacagtgtggaataccaccatagtggataaggcattctg 264

                                                                       
Query: 65  taaatccacggatcatggttttggaagaatcattatgtgcaataaaggcaaatccacaac 124
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 taaatccatggatcatggttttggaagaatcattatgtgcaataaaggcaaatccacagc 324

                                                                       
Query: 125 cagaataagtatctatttcaaataccaaacatattgttattccattttgaattctacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaataagtatctatttcaaataccaaacatattgttattccattttgaattctacatt 384

                                                                       
Query: 185 cattgtagaactaagcaagaaagatgagagacaaaagatagacagtgagtattgtgattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattgtagaactaagcaagaaagatgagagacaaaagatagacagtgagtattgtgattg 444

                                                                       
Query: 245 gatggtaagggatattttcatatcatgtggcttcattgttgcttttcttataaatggcag 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gatggtaagggatattttcatatcatgtggcttcaatgttgcttttcttataaatggcag 504

                                                                       
Query: 305 aaattaggaagagaaaaaggggaagaattcaacacaaactacatgcatcaaagggaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaattaggaagagaaaaaggggaagaattcaacacaaactacatgcatcaaagggaataa 564

                                                                       
Query: 365 attagaaaatatctgcaaagcgttggcaaaatttgacatcttcttttgcctgtgatgata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attagaaaatatctgcaaagcgttggcaaaatttgacatcttcttttgcctgtgatgata 624

                                                                       
Query: 425 aacaagataattaattctgtcttcatcttttaagtgaggatatgaactctgagattggat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacaagataattaattctgtcttcatcttttaagtgaggatatgaactctgagattggat 684

             
Query: 485 ta 486
           ||
Sbjct: 685 ta 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)