BAC Information

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BAC

Clone NameMSMg01-371B03
Chromosome12 (Build37)
Map Location 70,612,579 - 70,612,936
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862
Downstream geneGm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371B03.T7 (MSMg01no371_b03.b1)MSMg01-371B03.TJ (MSMg01no371_b03.g1)
ACCAG477667AG477668
length758828
length of high quality
(start - end)
355 (73 - 427)---
definitionCHROMAT_FILE: MSMg01no371_b03.b1 PHD_FILE: MSMg01no371_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:20 2005CHROMAT_FILE: MSMg01no371_b03.g1 PHD_FILE: MSMg01no371_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAATCAAAAGATTTGGGACAGTAAGCCC
TTTAGAAGTATCTGGCACACAGTAAGCATGATTATACTGTGATTCTGGTG
CTGACAGCCTTCCAGAATGAAACACTTGGTTCTCAGAAAGATGCCTTCTT
AAGAGGCCTTGAAGTAGACCACACCCTCTTTGACTTTCTGTCAGCCAGTG
AGGAGTGGGAGCTGGCCCCGTGGCATCCCTCCATCTGGAGTGAAGCTGAG
GGAATCCTCTGGAGACCAATGGTTGCCACCTTTCTGTTCCTCAGGCACTG
AATGGCAGTTTGCTCCATTTGGGGCATTTTGAGATGTATGGTGAGAGACA
GTGCTCATATTTGCAGTGGCCAGAAGGCCAAGGTCAGGGCCGGGCAGGGC
TGGTCCTCTCTGAGGACTTGTGCACGCGTGCATTGGCCTCACGCTGCTCT
CAGCTTAACTGATGTCTGGTGAATGCCATCTATATGCTTTTCTGATTGTT
GGAGTCCTATTTTGCCCCTTGACTCAATGGGTACGAATGGGTGTTGTTCC
CTTCTTCCGTTTTCTACTCTCCTACCTTTTTTTTTTTTTTTGGTTACTCA
TCTTTTCTTCCATACTGATCCTCCTCATGTTCTTCTTCTTTCTCCTCTCA
TTCCTTTATTTCACTCTTTTCCCTTTCTTCCTTATCTTCTCTCTTCCTTT
TCTCCCTG
TTCNNCCGCTATACGAATACTATACTTTCACGATCCGCGCAATTCTATAA
ATTCATCTTATACACTTGGCAAATAAATTAATTAATANAACGTAATCAAA
AATTTAAACTAAGNTATNCACTTAAAAGGGGTTAGATTTTTTTNNTTTTG
CTTAATTTTAAATTATGGTTTTTTTTTTTGTTTTGAGGTTGGGGGGGGGT
GGGGGGGGGATGTAGGGGGGTGGTTTTATGTAGTATTGAGCTAAATAAAA
AGAGGAAGAGATAANNNTTTTATAATTTTTAAAAAAAAAATTGGGNTTTT
TTCTTTNNNNNAAATNNNNAANNNANAATANNNAAAAAAAANTTTAAAAA
AAATAAAAAAAAAAANNNANNNNNTNTNNNNNTATNNNANNNNNNNNNNT
NNNNNNTNNNNNNNNNNNNNNNNNNNNTNTTTTTTTTNNNNAAAAATTTT
TTTTTTAAAATNTTTTTTTTTATTAATAAAATATNNNAATTTTANAAAAT
NNNTTTATNTNNNTTATATATTTANNNTTTAATNNATTTNNNNNNNNNNN
NNATNNNTANATNNNNNNNATTTTTTTTTNTNTTTTNNNNNNANNANTAT
TTTTTTTNNTTNNNTNTTTTNNNNTTTTNTTTTTNTTTTTANTNNATTAN
NNATTTNTTTTNTTNNTTTTTNTTTNANNNNNNTNTNTTTTTTNTTNNTT
TTTTNTTTTTTTNTTCNNCNNTTNNNTTNNNTTTCTTTNTANTNNNNCAC
TCCACTTTTTTCTTTCTCCTCCCTCCCTTATTTTTTTTCTCACCCTTTTA
CCAAATTTTATTTTTTTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_b03.b1 MSMg01no371_b03.b1 CHROMAT_FILE:
MSMg01no371_b03.b1 PHD_FILE: MSMg01no371_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:20 2005
         (355 letters)



>mm_chr12_70612379_70613136
          Length = 758

 Score =  627 bits (324), Expect = 0.0
 Identities = 349/358 (97%), Gaps = 3/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatcaaaagatttgggacagtaagccctttagaagtatctggcacacagtaagcatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 taatcaaaagatttgggacagtaagccctttagaagtatctggcacacagtaagcgtgat 260

                                                                       
Query: 61  tatactgtgattctggtgctgacagccttccagaatgaaacacttggttctcagaaagat 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tatactgtgattctggtgctgacagccttccagaatgagacacttggttctcagaaagat 320

                                                                       
Query: 121 gccttcttaagaggccttgaagtagaccacaccctctttgactttctgtcagccagtgag 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gccttcttaagaggccttgaagtagaccacaccctttttgactttctgtcagccagtgag 380

                                                                       
Query: 181 gagtgggagctggccccgtggcatccctcca--tc-tggagtgaagctgagggaatcctc 237
           |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||
Sbjct: 381 gagtgggagctggccccgtggcatccctccagatcctggagtgaagctgagggaatcctc 440

                                                                       
Query: 238 tggagaccaatggttgccacctttctgttcctcaggcactgaatggcagtttgctccatt 297
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tggagaccaatggttgccacctttctgttcctcaggcactgtatggcagtttgctccatt 500

                                                                     
Query: 298 tggggcattttgagatgtatggtgagagacagtgctcatatttgcagtggccagaagg 355
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tggggcattttgagaagtatggtgagagacagtgctcatatttccagtggccagaagg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 758
Length adjustment: 9
Effective length of query: 346
Effective length of database: 749
Effective search space:   259154
Effective search space used:   259154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)