Query= MSMg01no371_h07.b1 MSMg01no371_h07.b1 CHROMAT_FILE:
MSMg01no371_h07.b1 PHD_FILE: MSMg01no371_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:54 2005
(467 letters)
>mm_chr12_39176837_39177703
Length = 867
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%)
Strand = Plus / Minus
Query: 1 atcgggaggcatttgaaccttctcaaaaaagctcccttgggcccgtttaaattagtcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atcgggaggcatttgaaccttctcaaaaaagctcccttgggcccgtttaaattagtcatg 608
Query: 61 tttacccatggagatttttagccttatttcagatgtctgctactttataacatttgagcc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttatccatggagatttttagccttatttcagatgtctgctactttataacatttgagcc 548
Query: 121 tcgatgcttagcttaatctgattaattgttgataatggaaagtcatcaaaaagactctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcgatgcttagcttaatctgattaattgttgataatggaaagtcatcaaaaagactctgt 488
Query: 181 ctgaaacatccatttaaaaagaaaacctgattttataaatgtatagtgctggctaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgaaacatccatttaaaaagaaaacctgattttataaatgtatagtgctggctaaaggg 428
Query: 241 tgaacattgaaactgtttttattagtcagcttagaggaactgtaagcttcatctctatca 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 427 tgaacattgaaactgtttttattagtcagcttagaggaactgtgagcttcatctctatca 368
Query: 301 atttacacaaaaaaacggaatgggctggatactgtccaagaagctactattcgtatgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atttacacaaaaaaacggaatgggctggatactgtccaagaagctactattcgtatgcta 308
Query: 361 attagatatttagaataaaagactatattcatggaaaccaaattcatggccatggaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 attagatatttagaataaaagactatattcatggaaaccaaattcatggccatggaactc 248
Query: 421 cagtggcaaggtgctttggttaacccgggtttgttattgaaagatta 467
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 cagtggcaagttgctttggttaacccgggtttgttattgaaagatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_h07.g1 MSMg01no371_h07.g1 CHROMAT_FILE:
MSMg01no371_h07.g1 PHD_FILE: MSMg01no371_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:54 2005
(498 letters)
>mm_chr12_39006088_39006985
Length = 898
Score = 833 bits (431), Expect = 0.0
Identities = 479/497 (96%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 5 gaattccatatgtgtttacatataaaaatatcataatctcttcatgatagaaaaatatga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatgtgtttacatataaaaatatcataatctcttcatgatagaaaaatatga 264
Query: 65 tccctatttcaaggcttaaattattagttttcccagtaaactttctttttcagtcaagga 124
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 265 tccctatttcaaggcttaaattattagtttttccagtcaactttctttttcagtcaaggg 324
Query: 125 aaaagcagtatgtgctttaaatatgttttacataattattactttaaatcaaaactattt 184
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 325 aaaagcagtatgtgctttaaatatgttttatataattattactttaaatcaaaactgttt 384
Query: 185 aacataataattaatattgtctctaagcacagtggttctctacctgtgggtcttaatcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aacataataattaatattgtctctaagcacagtggttctctacctgtgggtctcaatcct 444
Query: 245 ttgggggttgttactggatatagtgcatatcagatatttagattacaattcataacatta 304
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggcggttgttactagatatagtgcatatcagatatttagattacaattcataaca--- 501
Query: 305 gtaatattacagctatgaagtggcaacaaaataattttatagttgaggtttaccacaata 364
|||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 502 gtaaaattatagctatgaagtggcaacaaaataattttatagttgagctttaccacaata 561
Query: 365 taaggagcttttctttttctttttaaatattttt--tggatatattatttatttacattt 422
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 562 taaggagcttttctttttctttttaaatatttttattggatatattatttatttacattt 621
Query: 423 caagtgttatcccctttcccagtggtttcccctctgcaa-ttccctatcccatcctcctt 481
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 caagtgttatcccctttcctagtggtttcccctctgcaaattccctatcccatcctcctt 681
Query: 482 accctgcttctatgagg 498
|||||||||||||||||
Sbjct: 682 accctgcttctatgagg 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
