Query= MSMg01no371_m03.b1 MSMg01no371_m03.b1 CHROMAT_FILE:
MSMg01no371_m03.b1 PHD_FILE: MSMg01no371_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:19 2005
(553 letters)
>mm_chr12_65935544_65936495
Length = 952
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 1 ttcacttagtgttatac-ttcagcaaagctatttaggcacaagttagttttaaagaaaga 59
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacttagtgttatactttc-gcaaagctatttaggcacaagttagttttaaagaaaga 259
Query: 60 catggttctttttgttgttgctcctggttataaaacatataggtttaaaaaggcactaaa 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 260 catggttctttttgttgttgctgctggttataaaacatataggtttaaaaaggcactaaa 319
Query: 120 ctctaaaggagagacataggtgaggacacaatttaggaaatgaaatcttagtcctatttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctctaaaggagagacataggtgaggacacaatttaggaaatgaaatcttagtcctatttt 379
Query: 180 gaattcattaaatctgtaattgaattggtctttcaaataaaaatgtcaagaagttagtgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattcattaaatctgtaattgaattggtctttcaaataaaaatgtcaagaagttagtgt 439
Query: 240 tatgatttagaaacaaaatgtcttccaaaagatgcatgtgctaggggtttagttaccagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatgatttagaaacaaaatgtcttccaaaagatgcatgtgctaggggtttagttaccagc 499
Query: 300 taataagtttgggaaaggtgtatgaatcctaaagagtttgacctagagaatggactaatg 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 taataagtttgggaaaggtgtatgaatcctaaagagtttgtcctagagaatggactaatg 559
Query: 360 cctggatggattctcaatacgatggcattattggtatatgggctgtataaaggttatgga 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctggatggattctcaatacgatggcattattggtatatgggctgtataaaggttatggg 619
Query: 420 aaatgtttcctaaatgacttaccttgtcctggcactttgttctctcttcctgcccacaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatgtttcctaaatgacttaccttgtcctggcactttgttctctcttcctgcccacaca 679
Query: 480 aggtgaacagttcttttacaccaaattcttaaaattataaaaaataaagaatttcagcag 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 aggtgaacagttcttttacaccaaattcttaaaattataaaaa-taaagaatttcagcag 738
Query: 540 agatagatgctagc 553
||||||||||||||
Sbjct: 739 agatagatgctagc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_m03.g1 MSMg01no371_m03.g1 CHROMAT_FILE:
MSMg01no371_m03.g1 PHD_FILE: MSMg01no371_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:19 2005
(551 letters)
>mm_chr12_66089268_66090221
Length = 954
Score = 967 bits (500), Expect = 0.0
Identities = 534/546 (97%), Gaps = 3/546 (0%)
Strand = Plus / Minus
Query: 9 ttcagtattatttaccgtaaaagata-aagcatacacggaaacagtccttggaaacactg 67
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 754 ttcagtattatttacagtaaaagatacaagcatacacggaaacagtccctggaaacactg 695
Query: 68 cagtcaaggcatgctgtctttatcatctt--taccacttcacacaatgtctattctgatc 125
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 694 cagtcaaggcatgctgtctttatcatctttataccacttcacacaatgtctattctgatc 635
Query: 126 agtactttttcatgttttacaataaacaaaagtacttttgcaggaatcacttacaaacaa 185
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agtattttttcatgttttacaataaacaaaagtacttttgcaggaatcacttacaaacaa 575
Query: 186 actcaatcactaacaaagcaaactcaaatgaaaatgattctaaacattaggtatttaata 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actcaatcactaacaaagcaaactcaaatgaaaatgattctaaacattaggtatttaata 515
Query: 246 gtttgacagactgttaagtttatcaaggatatcttacagtaaacccagtaataacagttg 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 514 gtttgacagactgttaagtttatcaaggatatcttacactaaacccagtaataacagatg 455
Query: 306 ttcttaagtttgtcactagaaatccccaagatttgataagagtactgatttcttattata 365
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcttaagtttgtcactagaaatcaccaagatttgataagagtactgatttcttattata 395
Query: 366 atctggagttcactaggtatgagatgtggcctcagaatctattcccatgcaaagattaag 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcaggagttcactaggtatgagatgtggcctcagaatctattcccatgcaaagattaag 335
Query: 426 tatgtatagaaattatcaaatatttattaattctggaaaatgcaatctattatacataga 485
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatgtatggaaattatcaaatatttattaattctggaaaatgcaatctattatacataga 275
Query: 486 ggtaggtacgattataatcaatcgctgattgatataaattctgcctaagttcacaaaagt 545
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 274 ggtaggtacgattataatcaatcgctgactgatataaattctgcctaagttcacaaaagt 215
Query: 546 agcagc 551
||||||
Sbjct: 214 agcagc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 954
Length adjustment: 10
Effective length of query: 541
Effective length of database: 944
Effective search space: 510704
Effective search space used: 510704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
