CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGAGACTTGTTTCTAATATTATATA
TACACTAGTCAGTTGTATTCAGAAGTCTCTATAGCAACCACTTTTATCAC
TTGAAACTAAGTACCTCTGAATAGAAATGCTCATGCGTGATTGCATGCAC
AGGGAAGAGAATAGAAGGAGCTTCCCTTATGTTATAAGAAAGCTGAGTTT
TCTTGGCAGGCTAATTTGAATCTTAAAAGGGAAGGGCATTTATTAGATGT
CTCCTATATGTCAAGACTTCTACTTTGCACAGCCTCCCTATGGAGTGGGT
ATCATCTTTATTTTACTATTGAAGAAAGATAATGGAAAGTATGAAATAAT
GGTCCCAGTGTTATAGAGCTGATAAGAAGTAGCAGCCATGGCTTATAGAG
AACATTTGATTCCACAGCACGATTACTTCCCCTATGACTCCTTGGGAAAG
TCTCATTGATAAATGCACGGACTGAGGTATTTTGTTGTAATTTTGAAGTA
ATCTTTGAACTCGAGTCCAGCTCTATAGATAAAGAATGGATTTACATTAA
CAAGGGTTCACTATGAGACCCTTTTTTGTTGGAAAGACTCACGCCCTTCG
GTGAAAAGTTAAACATTATATTGACCTTACTAGTGATTTGGTGGGGCGGT
GGTTCTTAACTTAAGTTATGTGCATCTTAATTTTTCCACTTTAAGGACTT
CT

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTCCATGTTACTGGAGAATTTACAAGTGACCTACCCCTTAAGCCC
ACACTGTAACATCAAATCAACATGGCAAGCCTTAGTCAAGTGACAGAGCT
CTGGATTTATCTGTCCCTCGGGTCCCCAGGGAAGCCCTTGATGATTCTCC
AGAAGCTGTTTCCTAGAAACAGAGGTGTTGAAACTGATGAAAAGGGGGCC
ACTCTGGTCTAAAATCTTTTTGAGGGACAAAAATTAAATGTGTTTTCTTT
CAGGGAACAGGAGCAGCAGAATGAAGAGTAGAGCCATTGGAAAAACAGAG
CCGTCAATGCCAGTTCAGTCATCCCTCCAAAATCAAGCTTAACAAATGGT
CGTGCTCCTGCCTGTGTCCATCTTTGTACTGACCAGGACAGCACAGGACA
AAAGCCAGTACACCGTTATGAACAAAGTGGTTTCTTTGTTCCATGCTGGA
GATGGAACCTATAGTCCACTGCATGCTGGGTAGAAACTGTACTAGTGAGA
TTCATCCCCAGCACAAATGGCTTATTTTTCATCTGGGCAGACTTATACCG
AGTATAAAATTCTAATATTAGAAGAAAGCAACCGGTGCCTTCCCATGCTC
TCTGCTTAACACTCACACCTCCTAAAGTCCTAGAATCTATGACTTATGAT
AATGCCAGCCAGTCTTATAGAACATCCTCCGGGTCTTCTGGGTGGTACTT
TTTA

Query= MSMg01no371_m04.b1 MSMg01no371_m04.b1 CHROMAT_FILE:
MSMg01no371_m04.b1 PHD_FILE: MSMg01no371_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:19 2005
         (513 letters)



>mm_chr12_75333741_75334653
          Length = 913

 Score =  961 bits (497), Expect = 0.0
 Identities = 509/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggagacttgtttctaatattatatatacactagtcagttgtattcagaagtctctat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggagacttgattctaatattatatatacactagtcagttgtattcagaagtctctat 260

                                                                       
Query: 61  agcaaccacttttatcacttgaaactaagtacctctgaatagaaatgctcatgcgtgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaccacttttatcacttgaaactaagtacctctgaatagaaatgctcatgcgtgatt 320

                                                                       
Query: 121 gcatgcacagggaagagaatagaaggagcttcccttatgttataagaaagctgagttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgcacagggaagagaatagaaggagcttcccttatgttataagaaagctgagttttc 380

                                                                       
Query: 181 ttggcaggctaatttgaatcttaaaagggaagggcatttattagatgtctcctatatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggcaggctaatttgaatcttaaaagggaagggcatttattagatgtctcctatatgtc 440

                                                                       
Query: 241 aagacttctactttgcacagcctccctatggagtgggtatcatctttattttactattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagacttctactttgcacagcctccctatggagtgggtatcatctttattttactattga 500

                                                                       
Query: 301 agaaagataatggaaagtatgaaataatggtcccagtgttatagagctgataagaagtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagataatggaaagtatgaaataatggtcccagtgttatagagctgataagaagtag 560

                                                                       
Query: 361 cagccatggcttatagagaacatttgattccacagcacgattacttcccctatgactcct 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 561 cagccatggcttatagagaacatttgattccacggcacgattacttcccctatgactccc 620

                                                                       
Query: 421 tgggaaagtctcattgataaatgcacggactgaggtattttgttgtaattttgaagtaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggaaagtctcattgataaatgcacggactgaggtattttgttgtaattttgaagtaat 680

                                            
Query: 481 ctttgaactcgagtccagctctatagataaaga 513
           |||||||||||||||||| ||||||||||||||
Sbjct: 681 ctttgaactcgagtccagttctatagataaaga 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_m04.g1 MSMg01no371_m04.g1 CHROMAT_FILE:
MSMg01no371_m04.g1 PHD_FILE: MSMg01no371_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:20 2005
         (510 letters)



>mm_chr12_75536846_75537755
          Length = 910

 Score =  855 bits (442), Expect = 0.0
 Identities = 490/506 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctccatgttactggagaatttacaagtgacctaccccttaagcccacactgt 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 710 gaattcatctccatggtaatggagaatttacaagtgacctaccccttaagcccacactgc 651

                                                                       
Query: 65  aacatcaaatcaacatggcaagccttagtcaagtgacagagctctggatttatctgtccc 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 650 aacatcaaatcaacatggcaagccttagtgaagtgacagagctctggatgtatctgtccc 591

                                                                       
Query: 125 tcgggtccccagggaagcccttgatgattctccagaagctgtttcctagaaacagaggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcgggtccccagggaagcccttgatgattctccagaagctgtttcctagaaacagaggtg 531

                                                                       
Query: 185 ttgaaactgatgaaaagggggccactctggtctaaaatctttttgagggacaaaaattaa 244
           ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 530 ttgaaactgatgaaaagcgggccactctggtctaaaagctttttgagggacaaaaattca 471

                                                                       
Query: 245 atgtgttttctttcagggaacaggagcagcagaatgaagagtagagccattggaaaaaca 304
           ||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct: 470 atgcgttttctttcagggaacaggagcagcggaatgaagagcagagccattgggaaaaca 411

                                                                       
Query: 305 gagccgtcaatgccagttcagtcatccctccaaaatcaagcttaacaaatggtcgtgctc 364
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 410 gagccgtcgatgccagttcagtcatccctccaaaatcaagcttaacaaatggccgtgctc 351

                                                                       
Query: 365 ctgcctgtgtccatctttgtactgaccaggacagcacaggacaaaagccagtacaccgtt 424
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 350 ctgcctgtgtccatctctgtactgaccaggacagcacaggacaaaagccagtacactgtt 291

                                                                       
Query: 425 atgaacaaagtggtttctttgttccatgctggagatggaacctatagtccactgcatgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgaacaaagtggtttctttgttccatgctggagatggaacctatagtccactgcatgct 231

                                     
Query: 485 gggtagaaactgtactagtgagattc 510
           ||||||||||||||||||||||||||
Sbjct: 230 gggtagaaactgtactagtgagattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)