Query= MSMg01no372_m17.b1 MSMg01no372_m17.b1 CHROMAT_FILE:
MSMg01no372_m17.b1 PHD_FILE: MSMg01no372_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:37 2005
(403 letters)
>mm_chr4_143371610_143372412
Length = 803
Score = 576 bits (298), Expect = e-169
Identities = 381/414 (92%), Gaps = 13/414 (3%)
Strand = Plus / Plus
Query: 1 gcagccacatgatggctcacagctccagttctagggctcttctaggcttcacagcctcca 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagccacatgatggctcccagctccagttctagggctcttctaggcttcacagcctcca 260
Query: 61 ggcattcatgtggtacagagtgcatgcatggtgaatttcaggtcagccagggatacataa 120
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtattcatgtgggacagagtgcatgcatggtgaatttcaggtcagccagggatacataa 320
Query: 121 caaatttgtcacaaaatcaagaaaatattccat-tcacctaaaagtctgaatcaagatca 179
||| ||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 321 caagtttgtcacaaaattaagaaaatattccatat-atctaaaagtctgaatcaagatca 379
Query: 180 aaacatatcaagtgtatacacacttagctaccagaaattggctgtagggagtgttgagat 239
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taacatatcaactgtatacacacttagctaccagaaattggctgtagggagtgttgagat 439
Query: 240 cctcctttaccccatgcagcctagatatgttgctcaggctagcttaaaacttcttggctc 299
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctccagcacctcatgcagcctagatatgttgctcaggctagcttaaaacttcttggctc 499
Query: 300 aag-aagtgacctgatcctccaacctcagttgagctgaattcttgatagcagcaccaaga 358
| | || |||||||| |||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct: 500 a-gtaactgacctgaccctccaacctcaattgagctgaattcttggtagcaccaccaaga 558
Query: 359 g---------gggtgaatgtgaacagaagtgtcttaatgaagtgagcaactcac 403
| ||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct: 559 gcctcatttggggggaaagtgaacagaagtgtctgaatgaagtgagcaactcac 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_m17.g1 MSMg01no372_m17.g1 CHROMAT_FILE:
MSMg01no372_m17.g1 PHD_FILE: MSMg01no372_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:37 2005
(509 letters)
>mm_chr12_89099599_89100507
Length = 909
Score = 957 bits (495), Expect = 0.0
Identities = 504/509 (99%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 1 cagtgtccccaaacatggcctctcaagatactggtgttcccatggagagtaaaaccaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtccccaaacatggcctctcaagatactggtgttcccatggagagtaaaaccaaaa 260
Query: 61 agaagaaaactggtactccagccagcctctgccacaagggcagggtccgaaggaaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagaaaactggtactccagccagcctctgccacaagggcagggtccgaaggaaagaaa 320
Query: 121 aaagaaagaaagaaagaggaagacccagccaggcccagagggaaggaaaaggtttgtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ----aaagaaagaaagaggaagacccagccaggcccagagggaaggaaaaggtttgtgca 376
Query: 181 gacaagaaactgcctgctagtagccccaggggcaaggcccaggggcctaaaggaaccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacaagaaactgcctgctagtagccccaggggcaaggcccaggggcctaaaggaaccaag 436
Query: 241 aaaaagtcatcctctgtgaccacagtggccagcccagggaaaggggggatgggctgcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaaagtcatcctctgtgaccacagtggccagcccagggaaaggggggatgggctgcact 496
Query: 301 tccaacacagggccccaagactctaggcatggtcctggtgcaccactgacctggaaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccaacacagggccccaagactctaggcatggtcctggtgcaccactgacctggaaagtt 556
Query: 361 ggcagtacaaggaagatgccttcgggcaagttggtggaacagaaggcccgctccctgaat 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcagtacaaggaagatgcctttgggcaagttggtggaacagaaggcccgctccctgaat 616
Query: 421 gaaggagccccccaggacactcctaagctcaaaaaacggaacctgagacacacagagcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaggagccccccaggacactcctaagctcaaaaaacggaacctgagacacacagagcta 676
Query: 481 tttggggctgaaagcaaggaggaggactc 509
|||||||||||||||||||||||||||||
Sbjct: 677 tttggggctgaaagcaaggaggaggactc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
