Query= MSMg01no372_n05.b1 MSMg01no372_n05.b1 CHROMAT_FILE:
MSMg01no372_n05.b1 PHD_FILE: MSMg01no372_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:40 2005
(502 letters)
>mm_chr12_53601107_53602009
Length = 903
Score = 903 bits (467), Expect = 0.0
Identities = 491/501 (98%), Gaps = 5/501 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtctc---ttacttaagactgctgctgtgggaaagcatggcaagagggggctt 61
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctgtctcaga--agttaagactgctgctgtgggaaagcatggcaagagggggctt 646
Query: 62 tgcttctgcaagtgggcaaatgaaggtatacaagcagcccctgagccatcggctgagtta 121
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 645 tgcttctgcaagtgggcaaatgatggtatacaagcagcccctgagccatcggctgagtta 586
Query: 122 agatgcctagggtttccttgtatctgttttaccgctactaatgatagtttcagcatgaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agatgcctagggtttccttgtatctgttttaccgctactaatgatagtttcagcatgaaa 526
Query: 182 gggtgctaagtatgtcttggctgtcatcgaggaaaatattttgacaagagttaagggagt 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gggtgctaagcatgtcttggctgtcatcgaggaaaatattttgacaagagttaagggagt 466
Query: 242 taaagtaatcgtgagtacaggaatggaagagaagtagaggaatgtgttgaccttcccgcc 301
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 465 taaagtaattgtgagtacaggaatggaagagaaggagaggaatgtgttgaccttcccgcc 406
Query: 302 tttctgttccactgagccgtgttctcttgactctccagaaccgtattttcagactgaaat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttctgttccactgagccgtgttctcttgactctccagaaccgtattttcagactgaaat 346
Query: 362 cccaaagatgctatcagagtctatcttcaaaatgtcatattcctgaccctcttagtcata 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cccaaagatgctatcagagtctatcttcaaaatgtcatattcctgaccctcttagtcata 286
Query: 422 tctaggacacaactgaaattgtcaaagtagtacgctattataaaacaatcactcttttta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctaggacacaactgaaattgtcaaagtagtacgctattataaaacaatcactcttttta 226
Query: 482 gagagtttatttgtaatgcag 502
|||||||||||||||||||||
Sbjct: 225 gagagtttatttgtaatgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_n05.g1 MSMg01no372_n05.g1 CHROMAT_FILE:
MSMg01no372_n05.g1 PHD_FILE: MSMg01no372_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:40 2005
(505 letters)
>mm_chr12_53469997_53470905
Length = 909
Score = 880 bits (455), Expect = 0.0
Identities = 494/509 (97%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 1 caggccggctaccatggccagccaccacttccatggattctgggatctctggttctcttg 60
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caggccggctaccacggccagccaccacttccatgggttctgggatctctggttctcttg 260
Query: 61 cttgtgcagctttaactactgagccatctccccatgctccacaaggacagaggctgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtgcagctttaactactgagccatctccccatgctccacaaggacagaggctgtaga 320
Query: 121 acagagtcaaagcactaagacaacctagcagctaaatactgacaagcctccgttaaaagc 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 321 acagagtcaaagcactaagacaacctagcagctaaatacggacaagcttccgttaaaagc 380
Query: 181 agataagcaataaactgccaggagataggcctgcctgacaccatgttccttctgtagtga 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agataagcaataaactgccaggagttaggcctgcctgacaccatgttccttctgtagtgt 440
Query: 241 gggggtcctaagaatgtcagtagtgagagagggtagatgatacttgagccactagaagtc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 441 gggggtcctaagaatgtcagtagtgagggagggtagatgatacttgagccactggaagtc 500
Query: 301 attacagatgggaaaggctgggacagggaacaaccactgggaagccccagcataactatt 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 attacagatgggaaaggctgggacagggaatgaccactgggaagccccagcataactatt 560
Query: 361 ttttttttttt----gccatcttgatagaatttggaaatgctttaaaatataagcctggt 416
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttttttttttgccatcttgatagaatttggaaatgctttaaaatataagcctggt 620
Query: 417 ttaaaatatgtatctttaaatccttagtttattattacacacatgcatatgtgcacacac 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ttaaaatatgtatctttaaatccttagtttattattacacacgtgcatatgtgcacacac 680
Query: 477 acatgcaacatctccactatttccatcag 505
|||||||||||||||||||||||||||||
Sbjct: 681 acatgcaacatctccactatttccatcag 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 909
Length adjustment: 10
Effective length of query: 495
Effective length of database: 899
Effective search space: 445005
Effective search space used: 445005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
