BAC Information

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BAC

Clone NameMSMg01-372P11
Chromosome12 (Build37)
Map Location 117,298,838 - 117,299,389
singlet/doubletsinglet
Overlap geneZfp386
Upstream geneIgh, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599
Downstream geneVipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372P11.T7 (MSMg01no372_p11.b1)MSMg01-372P11.TJ (MSMg01no372_p11.g1)
ACCAG479107AG479108
length737751
length of high quality
(start - end)
522 (66 - 587)552 (73 - 624)
definitionCHROMAT_FILE: MSMg01no372_p11.b1 PHD_FILE: MSMg01no372_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:50 2005CHROMAT_FILE: MSMg01no372_p11.g1 PHD_FILE: MSMg01no372_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACTTTACCATGGTAGATGATCTTTTTGATATGTTCTTTAGATTTGGTT
TGCAAGTATTTTATTGCTTTTGTATCCATGTATATAATTGAAATGGGTTT
ATCATTCTCTTTCTTTGTTGTGTTTTTATGTGGTTTGAGTGTGAGGAAAA
CTATGGCCTCATAAATTGGGCAAAGTTCCTTCTGTTTCTATTCAGTGGAA
TAATTTGAGGAGTATTGGCATTATCTTTTCTTTTAATGTCTGGTAGAATT
ATGTGCTAAAACGATCTGTCTGTGGGCTTTTTGGTTGAGAGACTTTTAAT
GATTGCTTCTATTTTTCTGGATGTTTTAGGTCTATTTAAATTCCTATCTG
ATCTTGATTTAACTTTGGTTTGTGGTATGTATTAAGAAAATTATCTATTT
ATTTTAGATTTTCTAATTTGGTGGAGTACATGTTTTTAAAGTATTTCTTT
TGATTTTATGGATTTCTTTTGCTATATATTTTCATTCCTTATTTTGTTAA
TTTGGACATTCTCTTCACCTAACCGCCACATACTGGAGGGGGTTTTTGAG
AGCTGGGCTTCTCTCCCAGGGACTCAGATCACAAACGTAGTCTCCTGATG
CTCTATTCCGCGCCATATGTGGTCGGATCCCGGCCCTGTCTTTGATATTC
CCCACACTTTTATATTCTCGAAAGGGCCTTTTTATTA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGGAGAGAAACCTTACAAATGTAAA
GACTGTGACAAAGCTTTTATCCACTGCACAAATCTTATTCAACACCAGAG
AATCCATACAGGAGAGAAACCATACAAATGTAATGAATGTGGGAAATCCT
TTAGTCAATGTTCAAACCTTAGAAAGCATGAGAGAATTCATACATGAAAA
AAACTAGCAAATGTCAAGAATCTAGTAAATCTTTGATCCATAGTCAAAAA
CTTGTGTAATGTCCTCTAATTCAAACTGGGGGGAGTCCTACAGAGGTAGT
GAATGTAACAAAGTCTGACTTATTTACAGGTCACTATCAGAGAACTAATT
GTTCCTTGGGAGAAACCCTACAAATCTGAAAAATGCCAAATTCTGAAGGT
TTAAAATCCTTTACCAGACACCACAGAATTCACTTTAGAAACACAAATGA
TTTTTTTAATGTGGAAAAAAATTAATTGTTGGCCATCTCTTACTAAACTT
TGAATTCACGCATGAGACAAAAACTGGCAAATGTGCACAACTGGACAGTT
ATTTATAGCTCTTCAGCTTTCACTAAATACAGAAAATCACACACGAGACA
AACCCTACAAGTGTAGAAAAAGTGAAACTTTTACCATTTTGCATACCTTA
ACCCCTGAGTTATACTAGAAAGAACACTGCGAACATAACTGTTTCAAAGC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_p11.g1 MSMg01no372_p11.g1 CHROMAT_FILE:
MSMg01no372_p11.g1 PHD_FILE: MSMg01no372_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:50 2005
         (552 letters)



>mm_chr12_117298638_117299589
          Length = 952

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggagagaaaccttacaaatgtaaagactgtgacaaagcttttatccactgcacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaggagagaaaccttacaaatgtaaagactgtgacaaagcttttatccactgcacaaa 260

                                                                       
Query: 61  tcttattcaacaccagagaatccatacaggagagaaaccatacaaatgtaatgaatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttattcaacaccagagaatccatacaggagagaaaccatacaaatgtaatgaatgtgg 320

                                                                       
Query: 121 gaaatcctttagtcaatgttcaaaccttagaaagcatgagagaattcatacatgaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatcctttagtcaatgttcaaaccttagaaagcatgagagaattcatacatgaaaaaa 380

                                                                       
Query: 181 actagcaaatgtcaagaatctagtaaatctttgatccatagtcaaaaacttgtgtaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actagcaaatgtcaagaatctagtaaatctttgatccatagtcaaaaacttgtgtaatgt 440

                                                                       
Query: 241 cctctaattcaaactggggggagtcctacagaggtagtgaatgtaacaaagtctgactta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctaattcaaactggggggagtcctacagaggtagtgaatgtaacaaagtctgactta 500

                                                                       
Query: 301 tttacaggtcactatcagagaactaattgttccttgggagaaaccctacaaatctgaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttacaggtcactatcagagaactaattgttccttgggagaaaccctacaaatctgaaaa 560

                                                                       
Query: 361 atgccaaattctgaaggtttaaaatcctttaccagacaccacagaattcactttagaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgccaaattctgaaggtttaaaatcctttaccagacaccacagaattcactttagaaac 620

                                                                       
Query: 421 acaaatgatttttttaatgtggaaaaaaattaattgttggccatctcttactaaactttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaatgatttttttaatgtggaaaaaaattaattgttggccatctcttactaaactttg 680

                                                                       
Query: 481 aattcacgcatgagacaaaaactggcaaatgtgcacaactggacagttatttatagctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattcacgcatgagacaaaaactggcaaatgtgcacaactggacagttatttatagctct 740

                       
Query: 541 tcagctttcact 552
           ||||||||||||
Sbjct: 741 tcagctttcact 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)