BAC Information

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BAC

Clone NameMSMg01-373A12
Chromosome12 (Build37)
Map Location 59,304,870 - 59,305,460
singlet/doubletsinglet
Overlap genenone
Upstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A12.T7 (MSMg01no373_a12.b1)MSMg01-373A12.TJ (MSMg01no373_a12.g1)
ACCAG479156AG479157
length7181,574
length of high quality
(start - end)		598 (12 - 609)---
definitionCHROMAT_FILE: MSMg01no373_a12.b1 PHD_FILE: MSMg01no373_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:54 2005CHROMAT_FILE: MSMg01no373_a12.g1 PHD_FILE: MSMg01no373_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATTCAGAGGATCCGCGGAATTCTTATGGTGTGAGTAGACTAAACTGAT
TTTGATGCAAGGACTAAAGGATTTACTCAGCTCTATGGCCAACTAGACAG
TATCAAGTTGGCAGACTAAAACATGATGTTGATAAGGAAAATAAACATGT
AGTTATTTTAGTTGAAGGTGTGGTGTGTCCAAATACTTCTGAATGGAACA
TAGGCCACTGTGTTGAATTATATAGATCCAGCTTCATTGGATAGAGGGAA
ATTAAAGGATGTCACTTATCTACAGTAATTGCTCAATAATTTTAATAAAA
TTGCTCAAAGAATAAAGAAATAAAATGCCAGATATTCTATTATTAAAATT
TTGAGCCAGTGGAAAAATGGGTTTCTTAAATTGAACAATAATGTTACACT
GTTATCTATAGTTTATAAATATTAGTTTGTAACAGTTAAATACTTTTATG
ATGCCCAGTACATATCAATGTTCTAAACACACAATGTGTTTATTCTTTGC
AAGTATTCTACCAAGTAGTTGTATAGCATATCTTCAATTTATGAATGATG
AAACTGGGGCACAGAGAGATCAGCCCCCTGCACAGGATAAATAGACAGTA
GCATGAGACTTAAACCCAGGACTATATCCCATCATTTGCAACACAATGCT
TTCATAAATGCCTTCATGTGGTTCATAACACAGCCATCTTCTGNAGTGTG
TCCTACAGACTGACAAGN

GGGTAAGAGGTGTAGGAGTGGTGGGGTGAGANAATACTGATTTATTATGA
ATNTAAAAAGGAGGTGGAAAGAGATACATAGAATTAGAATGATAGCAAAC
AAGAGAAGCCCGCGACCCAGCTTCTCCCCCCACGAACACGGCAGAGCGAC
ATCTACTGAAAGTCAGTCTCCCTCCCGGCACGACGAAATCTAAACAGAAC
AGAGATGGTCGGGTCGTAGAGGCGAAGTAAGTCAAGAGTGATACGAACAT
GGAGCAGATGACAAACACCANCACAGACGACGACTTTCTGCACGTCGATA
GTTGGTACATCAATCTNTTCATATCCGCGCATTTCGATTTCCATCTCCGC
TCCCTCCAACGTGGCGGCGTCAGCGTTGCGCAACGCCGCTACAAACTCAC
ATATCACGATCGATAGCAAACCAACTTCAATCCACAGCCACAATCATCAG
CTGCACTCCAGAACAAACAGGCTATAAGGAGCGGTGACAAAGACCACTGA
CGCATTATCATATACACACATAAGAGACANCACATCATTATTTCACTCTC
AAATAACTACACACTACACTACACAACCAATACCGTACTGCCACTACGCA
CACAGACAGTACATATACTATCAAAACGAGAAAGTGCGCTAGCAGATCTA
GAGCCGATAACATAACGGCGAACGTCGTCAAACATGCATAACACTTATCC
ATCATACACAGCAATACCATCCTCACAATAACTAACTGACAAAAGCTATA
CATAAATTACAATAGACACTCGACTAGAGTAGCAGGAATTACGACACAAA
GCAAGTCCCTGACGAATGCACACACGATACACATGTCCGACATACGTGTG
TCGCGATGCTAGATATTGTGAGACTCGAGATCAGCGACCACAAATTAAGA
GTCACGCGAATTGAGATTGCGCCTNGCAGACTTTATGCTCCACAACGACC
CGTATCTGCACACGTGCTATTTCTCACGCATCGCAATGAGACACCGCGCC
TCACACGCACTTACTCCAACACACGGTGATATACCTCTCCGCTCAATACT
GTATAGTGCACGCACTCCACATTGTATGATAAGCCTCAGACACGGCTCAC
GCGGCGATACCCGACGTAATGAGCGCGTCGAGCNATATAGNTATCGCGAG
ACGCGAGACCGTGCCAGCNCATCACACATCAAGATGATAAATAATGAAGA
CGTGAGTCTCTACACGTCATATAACACACCGAGTANATAGTCAATATATA
TTACACCACATAGACATCAGACTTTCGANACGTATACTGACCACGTATTA
GAACGCGCACAAATAATAAGTGTGAGAGAGACACATAGCACNCTGACATC
CATCACCTCACGTCTCAGTATCACACTGCGCTCACATACTCGACCGCGCT
ACTCGCCCNCACACACAACTAGCACACACTCTACCGAGATAGATGGAACA
CGACACGACCCCGTGTGAAGAAGATCTTGTGACGCTCAGAGAGCCACGCA
CGTCGTANATAGACAACTAATCGCCGCGACGTAAGTATGTATAATATGCC
ACCTCTGATCNTGAAGTTGTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a12.b1 MSMg01no373_a12.b1 CHROMAT_FILE:
MSMg01no373_a12.b1 PHD_FILE: MSMg01no373_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:54 2005
         (598 letters)



>mm_chr12_59304663_59305660
          Length = 998

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttatggtgtgagtagactaaactgattttgatgcaaggactaaaggatttactc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcttatggtgtgagtagactaaactgattttgatgcaaggactaaaggatttactc 267

                                                                       
Query: 68  agctctatggccaactagacagtatcaagttggcagactaaaacatgatgttgataagga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agctctatggccaactagacagtatcaagttggcagactaaaacatgatgttgataagga 327

                                                                       
Query: 128 aaataaacatgtagttattttagttgaaggtgtggtgtgtccaaatacttctgaatggaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaataaacatgtagttattttagttgaaggtgtggtgtgtccaaatacttctgaatggaa 387

                                                                       
Query: 188 cataggccactgtgttgaattatatagatccagcttcattggatagagggaaattaaagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cataggccactgtgttgaattatatagatccagcttcattggatagagggaaattaaagg 447

                                                                       
Query: 248 atgtcacttatctacagtaattgctcaataattttaataaaattgctcaaagaataaaga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgtcacttatctacagtaattgctcaataattttaataaaattgctcaaagaataaaga 507

                                                                       
Query: 308 aataaaatgccagatattctattattaaaattttgagccagtggaaaaatgggtttctta 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aataaaatgccagatattctattattaaaattttgagccagtggaaaaatgggtttctta 567

                                                                       
Query: 368 aattgaacaataatgttacactgttatctatagtttataaatattagtttgtaacagtta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aattgaacaataatgttacactgttatctatagtttataaatattagtttgtaacagtta 627

                                                                       
Query: 428 aatacttttatgatgcccagtacatatcaatgttctaaacacacaatgtgtttattcttt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatacttttatgatgcccagtacatatcaatgttctaaacacacaatgtgtttattcttt 687

                                                                       
Query: 488 gcaagtattctaccaagtagttgtatagcatatcttcaatttatgaatgatgaaactggg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcaagtattctaccaagtagttgtatagcatatcttcaatttatgaatgatgaaactggg 747

                                                              
Query: 548 gcacagagagatcagccccctgcacaggataaatagacagtagcatgagac 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gcacagagagatcagccccctgcacaggataaatagacagtagcatgagac 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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