BAC Information

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BAC

Clone NameMSMg01-373A18
Chromosome12 (Build37)
Map Location 60,072,035 - 60,072,489
singlet/doubletsinglet
Overlap geneSec23a
Upstream geneSstr1, Clec14a, LOC100040183
Downstream geneSip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A18.T7 (MSMg01no373_a18.b1)MSMg01-373A18.TJ (MSMg01no373_a18.g1)
ACCAG479168AG479169
length708710
length of high quality
(start - end)
590 (16 - 605)455 (56 - 510)
definitionCHROMAT_FILE: MSMg01no373_a18.b1 PHD_FILE: MSMg01no373_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:56 2005CHROMAT_FILE: MSMg01no373_a18.g1 PHD_FILE: MSMg01no373_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCCGAGAGGATCCGCGGAATTCTCTGTTTATCTCTGTACTCC
ACTTTTTAATTGGGTTATTTGGGTTTTTTGGACTCTAACATCTTTAGTTC
TTTAAATAATTTGATCTTAAAGCCTGAGCCACTGGTGTTTTCTGTTCAGG
AAATTTTCCCTTGTACCAATGTATTCCAAGCTATTTCCCACTTTCCCTTC
TATTAGAGTCAATGTATCTGGTTCTATATTGAGGTCCTTGATCCACTTGG
ACTTGAACTTTGAGCAGGGTGATAAATATGGATCAGTTGACATTCTTCTA
CACGCAGGCATCAAGTTAAACCAGCACCATTTGTTGAAGATGCTTTCTTT
TTTTCCATTTTGACTTCTTTATCAAAAACCCTTCACCATGATCAAGTAAG
CTTAATCCAAGGGATGTAGGATTGGTTCAATATACAAAAAAAAAAAAAAT
CAACATAATCCACTATATAAACAAATGAAAGAAAAAAAATCCCACAATTA
TCTCATTTGATGCTGAAAAAGCCTTTGACAAAATACAACACCCCTTTATG
TTAAAAGTTAAAAGCAAACAAAATTTGGAGGCTGCCTGGTAATAATCAAC
CCAACCCCAAATAAGGGACCTATTTCTGGGTAAGGGAAAGGAATGAGTGG
TGGAAGGCAAGACGAAAAAAAATTCCCCCTGTATTATAGCATGCTTTTGG
GCCCAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACAGTGTCTGGAAGTGTTTGGTAAATGTAAAATTTAAGAGCTAAG
ATGAAGGGAGAGCAGGAGCTACAGAAGCGCGCTCTGTTTGATGGTGAGAT
GATGTCTAGCACTGGCATGCAGATTTAAGACAAGGGAAAGGATTAAGATG
CTAACCTTACCCTATCATTGCTTCATTTTAGCCAGTTCTTCTAGACAGCA
GCAGCATTCTTGCAGATCGGATTCTCCTCATGGACACGTTCTTCCAGATT
TTGATTTATCACGGTGAGGTAAGATGGTAGATAGATTTATGTATGTGAAA
TAGTTTTACTCTGAGGAAAAAAATTTTCTTGTCTAATATGTAGCTCATAT
TTAGGCAATGATAATCTTTGGTTTATGTTTTTATAAAATATAATTTCTCT
AAATTTTTAATTAAAAATATCTTAATAAATATTTATAAAATATTTGACTA
TATTGTCCAAAAATTATAAATCCAAACATTTTGTGTACTAATATGCTACA
AATAAAAAAATCGTATTTTTTCATGTTCAAAGTTATTATTTAACTTTTTA
AAATAAAAATGGCTTTGCTTACTTTATGTGTAAACGGTCAGTGATTCCCT
CTTTCTCCACTCTTTATGTTTATCGCCCTTTTCTCCTCTTTTCTTTTTCA
TTTGTAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a18.g1 MSMg01no373_a18.g1 CHROMAT_FILE:
MSMg01no373_a18.g1 PHD_FILE: MSMg01no373_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:56 2005
         (455 letters)



>mm_chr12_60071918_60072772
          Length = 855

 Score =  833 bits (431), Expect = 0.0
 Identities = 449/455 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtgtctggaagtgtttggtaaatgtaaaatttaagagctaagatgaagggagagcag 60
           ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||
Sbjct: 572 acagtgtctggaagtgtttggcaaatgtaaaatccaagagctaagatgaagggagagcag 513

                                                                       
Query: 61  gagctacagaagcgcgctctgtttgatggtgagatgatgtctagcactggcatgcagatt 120
           ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 512 gagctacagaagcgcgctctgttagacggtgtgatgatgtctagcactggcatgcagatt 453

                                                                       
Query: 121 taagacaagggaaaggattaagatgctaaccttaccctatcattgcttcattttagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taagacaagggaaaggattaagatgctaaccttaccctatcattgcttcattttagccag 393

                                                                       
Query: 181 ttcttctagacagcagcagcattcttgcagatcggattctcctcatggacacgttcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttcttctagacagcagcagcattcttgcagatcggattctcctcatggacacgttcttcc 333

                                                                       
Query: 241 agattttgatttatcacggtgaggtaagatggtagatagatttatgtatgtgaaatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agattttgatttatcacggtgaggtaagatggtagatagatttatgtatgtgaaatagtt 273

                                                                       
Query: 301 ttactctgaggaaaaaaattttcttgtctaatatgtagctcatatttaggcaatgataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttactctgaggaaaaaaattttcttgtctaatatgtagctcatatttaggcaatgataat 213

                                                                       
Query: 361 ctttggtttatgtttttataaaatataatttctctaaatttttaattaaaaatatcttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctttggtttatgtttttataaaatataatttctctaaatttttaattaaaaatatcttaa 153

                                              
Query: 421 taaatatttataaaatatttgactatattgtccaa 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 152 taaatatttataaaatatttgactatattgtccaa 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)