Query= MSMg01no373_c04.b1 MSMg01no373_c04.b1 CHROMAT_FILE:
MSMg01no373_c04.b1 PHD_FILE: MSMg01no373_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:02 2005
(632 letters)
>mm_chr12_49126176_49127214
Length = 1039
Score = 1152 bits (596), Expect = 0.0
Identities = 619/630 (98%), Gaps = 7/630 (1%)
Strand = Plus / Plus
Query: 10 gaattctgtttttattgcgtatgtgtgaatatatgccaaggaatttctgttaattcaaaa 69
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctgtttttaatgagtatgtgtgaatatatgccaaggaatttctgttaattcaaaa 269
Query: 70 tggatatatttcagttgcacgcttaaatctgaaaagttattcatgcttaagaagttctat 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tggatatatttcagttgcacgcttaaatctgaaaagttattcatgcttaagaagttctat 329
Query: 130 ttatagcaacctaagttttggtagtagagtgaaatacaaagcaga-gagaacattttttc 188
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 ttatagcaacctaagttttggtagtagagtgaaatacaaagcagatgagaacattttttc 389
Query: 189 agtatagattcagtgctcataatagatgagcaaatacataaaata------taaatgcaa 242
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 390 agtatagattcagtgctcataatagatgagcaaatacataaaatagatatataaatgcaa 449
Query: 243 gctaaatagaataaggatcaaaagttaatctaaaaactgttatatacatgacattgacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gctaaatagaataaggatcaaaagttaatctaaaaactgttatatacatgacattgacta 509
Query: 303 gaacaattaggaaaatgaaatatatttctacacttatttgctccaggattattttttaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaacaattaggaaaatgaaatatatttctacacttatttgctccaggattattttttaca 569
Query: 363 aaatataaaatttacatgtaatttagttatgaataaaatctctaataaattcatgcaaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaatataaaatttacatgtaatttagttatgaataaaatctctaataaattcatgcaaaa 629
Query: 423 acaaaaaagatttaaatgggtgaagggataattaaattttttcattaggtaaaattacct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acaaaaaagatttaaatgggtgaagggataattaaattttttcattaggtaaaattacct 689
Query: 483 ttacatatttaacaatttggagaaaatattttgaagtaatttttgatgtttaaaagtcta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttacatatttaacaatttggagaaaatattttgaagtaatttttgatgtttaaaagtcta 749
Query: 543 aatgtcctataaggcaaatattgagactatggttgaatacaagccaatttatctgtcatc 602
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 750 aatgtcctataaggcaaatattgagactatggttgaatacaagccaacttatctgtcatc 809
Query: 603 caagagtatacaggtgaaggaatagtgaaa 632
||||| ||||||||||||||||||||||||
Sbjct: 810 caagaatatacaggtgaaggaatagtgaaa 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1039
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1029
Effective search space: 640038
Effective search space used: 640038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_c04.g1 MSMg01no373_c04.g1 CHROMAT_FILE:
MSMg01no373_c04.g1 PHD_FILE: MSMg01no373_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:02 2005
(570 letters)
>mm_chr12_49301727_49302696
Length = 970
Score = 936 bits (484), Expect = 0.0
Identities = 490/492 (99%)
Strand = Plus / Minus
Query: 79 ttgaaagaatacaataagcactactctctggagaagagctatctaaaagcatgtcagggg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ttgaaagaatacaataagcactactctctggagaagagctatctaaaagcatgtcagggg 911
Query: 139 agttaagtttggtcagaagtgggagtcagtacagtgagtgcagtgcagaggagttgagtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 agttaagtttggtcagaagtgggagtcagtacagtgagtgcagtgcagaggagttgagtt 851
Query: 199 tgttcaggcgctcatgcagttcagtgcaggtcagcagaggcagttgaagccagaggataa 258
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tgttcaggcgctcacgcagttcagtgcaggtcagcagaggcagttgaagccagaggataa 791
Query: 259 aaaggagccagaagagtaaatttaacaaaatgatcttacatgactgatggcactaagaat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aaaggagccagaagagtaaatttaacaaaatgatcttacatgactgatggcactaagaat 731
Query: 319 gcctccattgttcatgtcccatagcttcttgtcaatcatgtgcaggtgtccctgccaagt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gcctccattgttcatgtcccatagcttcttgtcaatcatgtgcaggtgtccctgccaagt 671
Query: 379 ttataaaatatgttatatattttattgatgatgctcactaaacattttactcttatcgtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttataaaatatgttatatattttattgatgatgctcactaaacattttactcttatcgtt 611
Query: 439 tctccaaagccataaaaataatatcctagaatcctgtatcattcacagcatgtattattt 498
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctccaaagccgtaaaaataatatcctagaatcctgtatcattcacagcatgtattattt 551
Query: 499 atcaactacttactattctagataaaacttgtcctcacttgactgctgtgactatggatc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atcaactacttactattctagataaaacttgtcctcacttgactgctgtgactatggatc 491
Query: 559 ctttcatcaaac 570
||||||||||||
Sbjct: 490 ctttcatcaaac 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
