BAC Information

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BAC

Clone NameMSMg01-373E02
Chromosome12 (Build37)
Map Location 111,372,493 - 111,372,645
singlet/doubletsinglet
Overlap genenone
Upstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746
Downstream gene3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373E02.T7 (MSMg01no373_e02.b1)MSMg01-373E02.TJ (MSMg01no373_e02.g1)
ACCAG479328AG479329
length712981
length of high quality
(start - end)
445 (48 - 492)153 (130 - 282)
definitionCHROMAT_FILE: MSMg01no373_e02.b1 PHD_FILE: MSMg01no373_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:11 2005CHROMAT_FILE: MSMg01no373_e02.g1 PHD_FILE: MSMg01no373_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTTCGAGAGGATCCGCGGAATTCAAGATGATTTCCGCAGACAA
TTAACAAGCAGCAAGGTCAAAGCAGCACTTTAAAAATCTCACAGGTACAT
AGCAGGACTTGTGCCTTGATTGGGCAGCACAGTGGAACTGCCTGTGGAAG
TAGGGGTACCAGTGAGCTGGCCCCTAAGGCTAGAGAGTGGAAGAGCTGAC
CCTGCCTCCTGCGGATGGCAGCATTGGCTGGCCTAGACCAATCAGTGCTG
GAGAGCTCACTCTGGTGGTGGAGATAGGGGAAAGTTCAGCTGATGCTGAT
TGAGCCAGTCTTGCCAACCCAAATCTGCAAGATCTCCATGAGACAGGACA
ACAGGATAACTGGGAGGACTCCGGGTGAGGATCCTATATTGATGGTGCCA
CAGAAGACAGATAGCTCCAACCAGCCAATGACTCATTGCAAGGAAGTGGA
GGTTTGTGTGGAGCACGCTGTGACCGCAGCTTCCACGATGAGGTTGCATG
GGCAGAGGGTGGACGCAAGGGGACAGGGAGATGAGTGGGACTGGGGTGCA
TGATGTGACAATCACAAAGAATCATTAAAAACTACCCTTAAAAAATCTCC
TGGTTAATAACATTCTTGCCCCGTTAGGGGCTCGCTGGCGAATTTTGCCT
TACCTAATATGCACTAATACCATTGCTTCCCAACTATTCCATATATTACA
TAAAAGAGGGAG
ATGTATGTTTTTTTTGAGTGTAGTTATTTAGCTTTTTTTCTTGTCATTGT
TTTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCATCTAGTATATTTTC
TACTGGGGGGGAATCATGTTTTCTAGTTTCTTTTAAGTATATGTAATCTT
AAATTTTATCTTGAATACTGGGAATGCCATCTGGATTTTGTTACATATCT
CTGAAGAGTGTTGATTTTGTAAAAGAAGAAGAAGAAGGAGGATGAGGAGG
AGCAGGAGCAGGAGAAGGAGGAGGAGGAGGATGAGTTTTTTTTTTTTTGT
TGACTTTCACATCTACATCTTTCCTCTTTTTTTTCTTTCCCACTCTTTTC
ATTTTACTCATTTTAATTTTTTTCATTTTTCACTTTTTTACTTTTTCACA
TATTTGTTCGATTTTTCCTTATACAATCCTCCTTCTTCACACATTATACC
TTTTTTTTCAATCTTTCTTATTTCGCTGATACACTTTTCCTCCTTTTTTT
GAATATTATATGTATTACTGAGCACTTTTCCTATCGCGTACCTTTCTCCT
TCTATCTATTTTTTCTATTTGCATACATTATAGCTATCTTTCTCTGATGA
ATGTTCTTTATCAGTATTTCCTTGCCTCTTATAAATCCTTCTCTTTTGTA
TATCTTTATTTCTTCATATTGTTTGGCATTGATCTGTTTATATTATTATA
TTATAACTTTTTATCACCGTTTTGGCATTTTACCTTTCTTGTCTTTCTCG
TATTTTGTTTGTTTCATATATTATTATTTTTTAACTGTTGTTATGTGAAC
TTCGTAGCTTTTTTGTGTTCTCTTCTTTTCCGACTCTTTCTGTCCCAACA
AAATAAACTAATTGCATTTCTTTTGCCCGTTGTGTTGCTCGTTGTTGTTT
GAGAGTTTTACTTCTTCCTTAACCATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_e02.g1 MSMg01no373_e02.g1 CHROMAT_FILE:
MSMg01no373_e02.g1 PHD_FILE: MSMg01no373_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:11 2005
         (153 letters)



>mm_chr12_111372293_111372845
          Length = 553

 Score =  273 bits (141), Expect = 4e-78
 Identities = 150/153 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttcatctagtatattttctactgggggggaatcatgttttctagtttcttttaagta 60
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 353 ttcttcatctagtatattttctactggggggggatcatgtttcctagtttcttttaagta 294

                                                                       
Query: 61  tatgtaatcttaaattttatcttgaatactgggaatgccatctggattttgttacatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 293 tatgtaatcttaaattttatcttgaatactgggaatgccatctggattttgttacgtatc 234

                                            
Query: 121 tctgaagagtgttgattttgtaaaagaagaaga 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tctgaagagtgttgattttgtaaaagaagaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)