BAC Information

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BAC

Clone NameMSMg01-373G08
Chromosome12 (Build37)
Map Location 38,509,466 - 38,509,697
singlet/doubletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb, LOC668824, LOC100043142, Etv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373G08.T7 (MSMg01no373_g08.b1)MSMg01-373G08.TJ (MSMg01no373_g08.g1)
ACCAG479436AG479437
length717730
length of high quality
(start - end)
621 (20 - 640)389 (59 - 447)
definitionCHROMAT_FILE: MSMg01no373_g08.b1 PHD_FILE: MSMg01no373_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:21 2005CHROMAT_FILE: MSMg01no373_g08.g1 PHD_FILE: MSMg01no373_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CACTCACTATTTCGAGAGGATCCGCGGAATTCTTTGTTTATCCTGGTACC
CCATTTTTAATAGGGTTATTTGGTTCTCTTAGAGTCTTACTTCTTGAGTT
CTTTGTATATCTTGGATATTAGTCCCCTATCGGATTTAGGGTTGTTGAAG
ATCCTTTCCCAATCTATTGGTTGCATTTTTGTCTTATTGACACTGTCTTT
GCCTTACAGAAGTTTTGAATTTTCTTGTGGTCCCATTTGTCAATTTTCGA
TCTTACAGCACAAGTCATTGGTGTTGTGTTCAGGAATTTTTCCAATGTGC
CTTTACCTTCAAGGCTCTTCCTCACGTTCGTCTCTATAAGTTTCAGTGTT
TCTGGTTTTATGTGGAATTCCTTGATCCACTTAGACTTGAGCTTCATACA
AGGTGATAAAAACAGATCAATTCATATTCTTAAAATGCTAAATTCCAGTT
GAGCCAGCAAAATTTGTTGAAAATGCTGACTTTTTCCTACTGGATGGTTT
TAGCTCCTTTCTCAAAGTTCAAGTGACCATAGGTTTGTGGGTTCATTTTT
GAGTCTTCAATTCTACTCCATTGATTCTCCTGTCTGTCACTGTACCAGTA
CCATGCAGGTTGTATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGCA
TGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGCTATC
CTAAGGTTTTATTATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTTATCTCAAACTAGTATCATTGTAGTTATTGAGAAAAGA
ATTCCTTGATTTAGTTGAAAATTATTTTCTTTATGAAAGGCTGTTTAAAA
TTCGCACTATTAGTCAGAACAAGGAGAGTCTAGGACAGCAGAAGAAGAAG
CAATGGCAAACGGTTTACCACTGGGACTCACCACACTAAGCAGAACATTC
ACTCTGTGATTACATCTTTAAACACACTAAGCATTTTTCTAAATTATTCC
ATTTATTATGTAAAAGATGCATATGAATGGATACTTTTTGGTAAGTCCAA
GGTCTTGTTTATAGCTCTATCTCTAGTGCATAAAGTTGTGCCTGGAATGA
AGTAGTCCAGGGATATGTGTATAGAGAGAGTGCTGAAGGAACTAACAGAA
TCAGCTTGTGAGAATAATTGAGGCAACATGTCAGATCATCTCAGCAAATT
TATAACTGGATCTCTTGAACAGAACAATTAAAATTTCTGGTATTTACAAT
GACTCACTGAAGACTGGTTTTATATGCAGCTTTCTGAAACCTTTAGTTGA
CACGTAATATGGATCTATTGCATTTGAAGGTTGGACCTTGGCCTTGTGCT
TTCCTCCTTGGTTGGGAATTTTCCTCCCTTCCTGGTTCGTAACCGTGACT
TATTGACCTTTTATTTATAATCCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_g08.g1 MSMg01no373_g08.g1 CHROMAT_FILE:
MSMg01no373_g08.g1 PHD_FILE: MSMg01no373_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:21 2005
         (389 letters)



>mm_chr12_38509266_38510054
          Length = 789

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttatctcaaactagtatcattgtagttattgagaaaagaattccttgatttagttga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 432 tttttatctcaaactagtatcattgtagttattgagaaaagaactccttgatttagttga 373

                                                                       
Query: 61  aaattattttctttatgaaaggctgtttaaaattcgcactattagtcagaacaaggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaattattttctttatgaaaggctgtttaaaattcgcactattagtcagaacaaggagag 313

                                                                       
Query: 121 tctaggacagcagaagaagaagcaatggcaaacggtttaccactgggactcaccacacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tctaggacagcagaagaagaagcaatggcaaacggtttaccactgggactcaccacacta 253

                                                               
Query: 181 agcagaacattcactctgtgattacatctttaaacacactaagcatttttct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agcagaacattcactctgtgattacatctttaaacacactaagcatttttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)