Query= MSMg01no374_f15.b1 MSMg01no374_f15.b1 CHROMAT_FILE:
MSMg01no374_f15.b1 PHD_FILE: MSMg01no374_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:34 2005
(502 letters)
>mm_chr12_39562114_39563012
Length = 899
Score = 924 bits (478), Expect = 0.0
Identities = 492/498 (98%), Gaps = 3/498 (0%)
Strand = Plus / Plus
Query: 5 gaattccagtggtcctaacgtaagagttcttacatattagaagaggaacaggaaaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtggtcctaacgtaagagttcttacatattagaagaggaacaggaaaaaaaa 264
Query: 65 aaaaaaagcagagttaagattccttcgctgaattacgttttgtctcagagagctggaaaa 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaa---gcagagttaagattccttcgctgaattacgttttgtctcagagagctggaaaa 321
Query: 125 tctactccatatcatctgtcagaggaaagaggtcttcctgaacgtacagaagcttaaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctactccatatcatctgtcagaggaaagaggtcttcctgaacgtacagaagcttaaaat 381
Query: 185 tgattccaaatgttactaccaagttttgccaacatttaattttgaaactgaaaaccttac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgattccaaatgttactaccaagttttgccaacatttaattttgaaactgaaaaccttac 441
Query: 245 ctaccttgtctctattgagtttttctgtgaaattgggacataagttttttacacttctag 304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 ctaccttgtctctattgagtttttctgtgaaattgggacataagatttttacacttctag 501
Query: 305 gtattttctaagatgtgtgaagtaatgggtaatgtttgtgaggagggcaccacccacctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtattttctaagatgtgtgaagtaatgggtaatgtttgtgaggagggcaccacccacctg 561
Query: 365 taaggttttattactaacattgtagccaggtccatagctggtttttgatgtggagatact 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taaagttttattactaacattgtagccaggtccatagctggtttttgatgtggagatact 621
Query: 425 tgagagtggtccaatttccttccatctggatgcaagtgaacggacatcctttatgaaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgagagtggtccaatttccttccatctggatgcaagtgaacggacatcctttatgaaaga 681
Query: 485 cttattgtaataactgct 502
| ||||||||||||||||
Sbjct: 682 cctattgtaataactgct 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 899
Length adjustment: 10
Effective length of query: 492
Effective length of database: 889
Effective search space: 437388
Effective search space used: 437388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_f15.g1 MSMg01no374_f15.g1 CHROMAT_FILE:
MSMg01no374_f15.g1 PHD_FILE: MSMg01no374_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:34 2005
(430 letters)
>mm_chr12_39696044_39696873
Length = 830
Score = 808 bits (418), Expect = 0.0
Identities = 418/418 (100%)
Strand = Plus / Minus
Query: 1 aggatttgttacatgcaaagaactgagtagtcaaaagagcaacaagttatctcatttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aggatttgttacatgcaaagaactgagtagtcaaaagagcaacaagttatctcatttctt 359
Query: 61 aatgccccgtctaaagctttggaataggctattgactccaacttcctgaactgtttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aatgccccgtctaaagctttggaataggctattgactccaacttcctgaactgtttttct 299
Query: 121 acttgaaaaatcaatgtgagaaaaaatatagacatatatgtgaaaatacaattatgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acttgaaaaatcaatgtgagaaaaaatatagacatatatgtgaaaatacaattatgaaaa 239
Query: 181 cttattattgtatatcttctcttaaaaattaatcataaacttcctattctattaggtaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cttattattgtatatcttctcttaaaaattaatcataaacttcctattctattaggtaca 179
Query: 241 gtgtatttggatttataataacatccttgatccacttggacttgagctttatgcagggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gtgtatttggatttataataacatccttgatccacttggacttgagctttatgcagggtg 119
Query: 301 ataaatatggatcaatttgcattcttccacatgcagaccaccagttagaccagtaccatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ataaatatggatcaatttgcattcttccacatgcagaccaccagttagaccagtaccatt 59
Query: 361 tgttgaagatgatttctttttttcactgtatggttttggcatatttgtcaaaagtcaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tgttgaagatgatttctttttttcactgtatggttttggcatatttgtcaaaagtcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
