BAC Information

Click to search

BAC

Clone NameMSMg01-374N17
Chromosome12 (Build37)
Map Location 113,736,594 - 113,883,999
singlet/doubletdoublet
Overlap geneA530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1
Upstream geneEif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik
Downstream geneAkt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N17.T7 (MSMg01no374_n17.b1)MSMg01-374N17.TJ (MSMg01no374_n17.g1)
ACCAG480550AG480551
length756732
length of high quality
(start - end)		518 (51 - 568)512 (59 - 570)
definitionCHROMAT_FILE: MSMg01no374_n17.b1 PHD_FILE: MSMg01no374_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:14 2005CHROMAT_FILE: MSMg01no374_n17.g1 PHD_FILE: MSMg01no374_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,736,594 - 113,737,108)(113,883,488 - 113,883,999)
sequence
NNNNNCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTATGTTCCCGCCCAGTCCTCTGTCTTGGGAGCCATAGCC
TGGATGTTACCGTACATAGCTCTTTGAGGGTGCGTTTGGGAAGGCGAGCC
CCAATCTCCTGCTGCTTTGAGGGCTGGGCCCAGCTTTTGCCACACCATCA
CGAGACAGGGTGCCTCTCTCGCTCCAGTTCATGGAGCCCATGAGAATTGT
CCTTTTCTCTGAGCCCAGGTCTGAATTCCTCCACTTCATGCGCAGTGATC
CGTCAGGGGTCACTGTGGTGTGGGAACAGAGTCCAGCTCTGAACACAGTT
GCTCTCAGAACAGGAGTGTGGCACCGAGGGTCTTCTTCCGGGGCCACACA
CAGGCCCAAAGCCATCGGGCCTGCCCACCAGCTGCAGGCCCTGTGAGTGT
CCTGAACATCTGTGTACACTGTTCTGTCACTCATGTTGAAAGGCAAGGGG
AAGCGAGCACCAGCGTGTAGCAACCGCTTCAGAGCATCCCAGACCCGCCT
GGAGGGGGAGCCCTGAGCTCAGCGGGGAGGCCCAGTCGGACACCAGGAGG
ATCCGCAGGGGGACCCTGTACCACCCTGGAACAAACAAATGAGCAGGGTT
TGTGAGCCCGGATAAAACTGGTGGGAGCCCTAATGTACCCCTCTACTTAG
GTGGGCAGACAGGGAACCCATATTAAAATAACTGGGGGCTCCTCCCCCCC
GGGAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTCCTACTGTATGTTCTTGGGACCTGACTCATGTCCAGGCT
TGCATAGACTGCACTTTAACCAGCTGAGGCATTTTCTGGGCCGTGTTTGC
ATTGTTATTGCTGTTTTAAGACATCTCACCATAAAGCCCATGCCTTTCCC
TTCTGAGTGCTGGCGTCAAAAAACAAGCCACGACGCCAGGCCATGTCTAG
ACTGGGGGGCGTGGGGGGAGGCACACTCTTTGCAGCTCAGTCCTGTCCCT
TCACGCATCGCCCCTGCGTCTCAGCACTTGAGTTTGCATTCCCAGAGTAC
AGAGAGGGAAAGGACAAATACTGGGGCTGCGTAGGGAGTTTGTTTTCCCG
CACATTCCAAAGGCGCAGCGGCACCGCTCAAAGTTATACGGCCGCAAACT
GCGCCAAGCTACGGTACACTGCGTTACACCTGCCCCAGAAAGCCATCACT
GCAAGGCAATGCTCAGCAACATCCATCCGCTACAAAGGCCACTTGCGAGG
GCTCAGGGCAGTCTACGCCATCACGCCCACTCGAACCCAGTCCCCGCGTC
GGTCCCGCGCTAGGCTTAGTCGCTCGGCAGCACTCGGGTCCGAATCGGAT
TTCTCCGGGAGCCCCCTGAACAACATCCACCGTGAGCGCTCGGGAAAATC
CCCTGGTCTTCCGTTTTCCTGGGATGAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n17.b1 MSMg01no374_n17.b1 CHROMAT_FILE:
MSMg01no374_n17.b1 PHD_FILE: MSMg01no374_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:14 2005
         (518 letters)



>mm_chr12_113736391_113737308
          Length = 918

 Score =  988 bits (511), Expect = 0.0
 Identities = 514/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatgttcccgcccagtcctctgtcttgggagccatagcctggatgttaccgt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatgttcctgcccagtcctctgtcttgggagccatagcctggatgttaccgt 263

                                                                       
Query: 64  acatagctctttgagggtgcgtttgggaaggcgagccccaatctcctgctgctttgaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatagctctttgagggtgcgtttgggaaggcgagccccaatctcctgctgctttgaggg 323

                                                                       
Query: 124 ctgggcccagcttttgccacaccatcacgagacagggtgcctctctcgctccagttcatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgggcccagcttttgccacaccatcacgagacagggtgcctctctcgctccagttcatg 383

                                                                       
Query: 184 gagcccatgagaattgtccttttctctgagcccaggtctgaattcctccacttcatgcgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagcccatgagaattgtccttttctctgagcccaggtctgaattcctccacttcatgcgc 443

                                                                       
Query: 244 agtgatccgtcaggggtcactgtggtgtgggaacagagtccagctctgaacacagttgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgatccgtcaggggtcactgtggtgtgggaacagagtccagctctgaacacagttgct 503

                                                                       
Query: 304 ctcagaacaggagtgtggcaccgagggtcttcttccggggccacacacaggcccaaagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcagaacaggagtgtggcaccgagggtcttcttccggggccacacacaggcccaaagcc 563

                                                                       
Query: 364 atcgggcctgcccaccagctgcaggccctgtgagtgtcctgaacatctgtgtacactgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcgggcctgcccaccagctgcaggccctgtgagtgtcctgaacatctgtgtacactgtt 623

                                                                       
Query: 424 ctgtcactcatgttgaaaggcaaggggaagcgagcaccagcgtgtagcaaccgcttcaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtcactcatgttgaaaggcaaggggaagcgagcaccagcgtgtagcaaccgcttcaga 683

                                              
Query: 484 gcatcccagacccgcctggagggggagccctgagc 518
           |||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatcccagacccgcctggagggggagccctgagc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_n17.g1 MSMg01no374_n17.g1 CHROMAT_FILE:
MSMg01no374_n17.g1 PHD_FILE: MSMg01no374_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:14 2005
         (512 letters)



>mm_chr12_113883288_113884199
          Length = 912

 Score =  990 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctactgtatgttcttgggacctgactcatgtccaggcttgcatagactgcacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tctcctactgtatgttcttgggacctgactcatgtccaggcttgcatagactgcacttta 653

                                                                       
Query: 61  accagctgaggcattttctgggccgtgtttgcattgttattgctgttttaagacatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 accagctgaggcattttctgggccgtgtttgcattgttattgctgttttaagacatctca 593

                                                                       
Query: 121 ccataaagcccatgcctttcccttctgagtgctggcgtcaaaaaacaagccacgacgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ccataaagcccatgcctttcccttctgagtgctggcgtcaaaaaacaagccacgacgcca 533

                                                                       
Query: 181 ggccatgtctagactggggggcgtggggggaggcacactctttgcagctcagtcctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggccatgtctagactggggggcgtggggggaggcacactctttgcagctcagtcctgtcc 473

                                                                       
Query: 241 cttcacgcatcgcccctgcgtctcagcacttgagtttgcattcccagagtacagagaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttcacgcatcgcccctgcgtctcagcacttgagtttgcattcccagagtacagagaggg 413

                                                                       
Query: 301 aaaggacaaatactggggctgcgtagggagtttgttttcccgcacattccaaaggcgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaggacaaatactggggctgcgtagggagtttgttttcccgcacattccaaaggcgcag 353

                                                                       
Query: 361 cggcaccgctcaaagttatacggccgcaaactgcgccaagctacggtacactgcgttaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cggcaccgctcaaagttatacggccgcaaactgcgccaagctacggtacactgcgttaca 293

                                                                       
Query: 421 cctgccccagaaagccatcactgcaaggcaatgctcagcaacatccatccgctacaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cctgccccagaaagccatcactgcaaggcaatgctcagcaacatccatccgctacaaagg 233

                                           
Query: 481 ccacttgcgagggctcagggcagtctacgcca 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ccacttgcgagggctcagggcagtctacgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |