Query= MSMg01no375_a22.b1 MSMg01no375_a22.b1 CHROMAT_FILE:
MSMg01no375_a22.b1 PHD_FILE: MSMg01no375_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:31 2005
(490 letters)
>mm_chr12_83046752_83047640
Length = 889
Score = 835 bits (432), Expect = 0.0
Identities = 471/484 (97%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 7 attctcggatctttgacgagacgatgtcgttgccagttatataccttatcttgctggctt 66
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 207 attctcggatccttgacgagacgatgtcgttgtcaattatataccttatcttgctggctt 266
Query: 67 cttaaacatgtacattgctttacttatgtgccctccccatcatagttaggcctccgtaca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttaaacatgtacattgctttacttatgtgccctccccatcatagttaggcctccgtaca 326
Query: 127 tcctcaagaaggcatttcaagtggggtctgagttttaaaatcccattagtaggaactagt 186
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 327 tcctcaagaaggcatttcaagtggggtctgggttttaaaatcccatgagtaggaactagt 386
Query: 187 ttatacagtggagtttgttataagacaactggacttttgtgctgttatttcttgttctat 246
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 ttatacagtggagtttgttataagacaactggacttttgtgctattatttcttgttctat 446
Query: 247 tcattttatttgcgtttccttttgttttcaaatatagagaggcactgttgtattctagac 306
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcattttatttgcttttccttttgttttcaaatatagagaggcactgttgtattctagac 506
Query: 307 ggtgtcgtcacagtcaggtgggaggagggccttgcggcctaggcagtgctgtgctgttgt 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 ggtgtcgtcacagtcaggtgggaggagggccttgcggcctaggcagtgctgtgctgctgt 566
Query: 367 gggttacaggacattgcagcagggtcttgtgagaagaggcatggggttgagcgcggcctc 426
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 567 gggttacagg-cattgcagcagggtcttgtgggaagaggcatggggttgggcgcggcctc 625
Query: 427 cgagagctgggttttagctcttatgtgtttacttagtttgatttttaatccctttagatt 486
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cgagagctcggttttagttcttatgtgtttacttagtttgatttttaatccctttagatt 685
Query: 487 ttat 490
||||
Sbjct: 686 ttat 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space: 421920
Effective search space used: 421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_a22.g1 MSMg01no375_a22.g1 CHROMAT_FILE:
MSMg01no375_a22.g1 PHD_FILE: MSMg01no375_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:31 2005
(476 letters)
>mm_chr12_83288976_83289851
Length = 876
Score = 897 bits (464), Expect = 0.0
Identities = 473/476 (99%)
Strand = Plus / Minus
Query: 1 agcagcctggtccccattcacagggctcaggcgtcctgcaggcctgttacaaagctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agcagcctggtccccattcacagggctcaggcgtcctgcaggcctgttacaaagctgaag 617
Query: 61 actaatgtagcttgaagtggaccctcaaccatcctgtcaatgttaatcccatgactagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 actaatgtagcttgaagtggaccctcaaccatcctgtcaatgttaatcccatgactagga 557
Query: 121 agcaacaagctaacactaggtggctccttttcaggcaaaaagaaattaatacgaataaaa 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcaacaggctaacactaggtggctccttttcaggcaaaaagaaattaatacgaataaaa 497
Query: 181 cacacagcaacaagccgtacacgaagcaagtcaggaaacagcagtcaggaaacagcaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cacacagcaacaagccgtacacgaagcaagtcaggaaacagcagtcaggaaacagcaggc 437
Query: 241 tgatgcggctaccagccaagaatgaatgcctaagtacttgctcctctagggcgaataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgatgcggctaccagccaagaatgaatgcctaagtacttgctcctctagggcgaataaaa 377
Query: 301 ttatacaaaatgaggaagggtccctatcatctaagaaggttacctggaaagaatcagagg 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 376 ttatacaaaatgaggaagggtccctatcgtctaagaaggttacctggaaagaatcagagg 317
Query: 361 gcttctcttgccagccacatccccctctaggtcctatgttctaagcacacaaaacccaaa 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 316 gcttctcttgccagccacatccccctctaggccctatgttctaagcacacaaaacccaaa 257
Query: 421 accgtatctacatggtcttacagccaagtgtaataaaaccagcaagtcagtgacat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 accgtatctacatggtcttacagccaagtgtaataaaaccagcaagtcagtgacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
