Query= MSMg01no375_i17.b1 MSMg01no375_i17.b1 CHROMAT_FILE:
MSMg01no375_i17.b1 PHD_FILE: MSMg01no375_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:10 2005
(485 letters)
>mm_chr12_112599638_112600522
Length = 885
Score = 764 bits (395), Expect = 0.0
Identities = 448/485 (92%), Gaps = 33/485 (6%)
Strand = Plus / Minus
Query: 4 ggaattctgcagtttc-c--ggtttgaaaggaaatcttcatgttgaacagtaggggagcc 60
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggaattctgcag---cactgggtttgaaaggaaatcttcatgttgaacagtaggggagcc 539
Query: 61 tgcgcagaccttgaaatcaggtccagagtgcggcggggctggtagtgaccaagtttggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgcgcagaccttgaaatcaggtccagagtgcggcggggctggtagtgaccaagtttggga 479
Query: 121 agtgtagtttatgctgaatactgaaaccatccgtccagttagcattgcaggatttgcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtgtagtttatgctgaatactgaaaccatccgtccagttagcattgcaggatttgcaca 419
Query: 181 gaagttttaccagctcataaaacttttacggcccagaaggaactccagcaataaacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaagttttaccagctcataaaacttttacggcccagaaggaactccagcaataaacaaat 359
Query: 241 gaattcatagccattcagctgggcttggagctcgctgtcttgacaggcttccattggaga 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattcatagccactcagctgggcttggagctcgctgtcttgacaggcttccattggaga 299
Query: 301 cgctgccccacttactacagggctggtggccatggagcccatgtcctagcctggagactg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 298 cgctgccccacttactacagggctggtggccatggagcccatgtcctagcctggagaccg 239
Query: 361 tgtctgtggatggacgctggagtctggagtctgtggatggacgcttcagcagtgtgtgtt 420
|||||||||||||||||| |||||||||||||||
Sbjct: 238 tgtctgtggatggacgct---------------------------tcagcagtgtgtgtt 206
Query: 421 gcatccccagaacccggttttggcagccgcttcccttcactgtcttccctgtacaccatg 480
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gcatccccagaacccagttttggcagctgcttcccttcactgtcttccctgtacaccatg 146
Query: 481 cagtc 485
|||||
Sbjct: 145 cagtc 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_i17.g1 MSMg01no375_i17.g1 CHROMAT_FILE:
MSMg01no375_i17.g1 PHD_FILE: MSMg01no375_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:10 2005
(422 letters)
>mm_chr12_112456568_112457389
Length = 822
Score = 801 bits (414), Expect = 0.0
Identities = 420/422 (99%)
Strand = Plus / Plus
Query: 1 tttatgttatgttcacattctgtgggagacagaatctctttaaataaaaagtaaacactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgttatgttcacattctgtgggagacagaatctctttaaataaaaagtaaacactc 260
Query: 61 cagaagttttgacttaggccatgtttagagagagaactcacaggttagtaaagcccagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagttttgacttaggccatgtttagagagagaactcacaggttagtaaagcccagac 320
Query: 121 caggccttctctaggcccagagcgaggagctgctgggctcagcgtggggagttacacgtg 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 caggccttctctaggcccagagcgaggagctgctgggctcagtgtggggagttacacgtg 380
Query: 181 gtgatgagtcggggtgcaagaattaagttctgggcagtgatcatcaaatggaaatgttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatgagtcggggtgcaagaattaagttctgggcagtgatcatcaaatggaaatgttta 440
Query: 241 taaagtttattcaaaatagcctaaattttgtattaagaacgcataagctattatgcagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagtttattcaaaatagcctaaattttgtattaagaacgcataagctattatgcagct 500
Query: 301 atttagttagaaggattaatataccgatgagttctgttggaaagctgagcaacagacatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttagttagaaggattaatataccgatgagttctgttggaaagctgagcaacagacatc 560
Query: 361 ctcacatccttcttctaggagtgtaaattattatagccaccttgggaaatagttggcttc 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctcacatccttcttctaggagtgtaaattattatagccactttgggaaatagttggcttc 620
Query: 421 ct 422
||
Sbjct: 621 ct 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
