BAC Information

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BAC

Clone NameMSMg01-375J09
Chromosome12 (Build37)
Map Location 57,808,651 - 57,808,811
singlet/doubletsinglet
Overlap genePax9
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
Downstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375J09.T7 (MSMg01no375_j09.b1)MSMg01-375J09.TJ (MSMg01no375_j09.g1)
ACCAG481103AG481104
length765744
length of high quality
(start - end)
455 (53 - 507)278 (83 - 360)
definitionCHROMAT_FILE: MSMg01no375_j09.b1 PHD_FILE: MSMg01no375_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:13 2005CHROMAT_FILE: MSMg01no375_j09.g1 PHD_FILE: MSMg01no375_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTAACAGTGGATATAGGGTCTATCTCTGACCCTTTGCC
TGCTTGTGGAACCCTGTTCCTCCTACAGTGTTGCTGTGTCCAGCCTTGAT
GTTATGTATGCCTGTATTACTTTAGCTTGTTATGCTGTATTTGTTTGATG
ACCCTGGGAGATCTGTTCCTTTCTGTGGGAAGGTGGAGGCAGTGTGACTC
TGGTAGAGAGGGGAGGGAGGGTAAACTGCAGTCAAGATGTAATATATTAG
AGATGAGTAAAATTAAAAATAAAGTAAAAATAATAATGAAATCTAACTTT
CCGTAACTGTCGTGGTTTTAATAGGTATGGCCCCCATAAACTTATGTGTT
TGAATGCTTGGCCCATAGGAAAGGGCACTCTTAGGAGGTGTGGCCTTACT
GGAATAGATGTGGCCTTGCTGGAGTAGGTGTGGTCTTGTTGGAGGAAGTG
TGTCACTGTGTGGGCAGTCTTTGAGTTCTCCTATGCTCAAGTTCTACCCA
GTGTAAAATCCCGTCTCTTTCCTTGCTGCCTGTGGATCCATATGTGGAAA
TCTAGGCTCTATTCCCCTAAATCTTTTTGTCCCTAAGATGCCTCGCTTTC
TCGCCTTAATTATAATTCTTTCAACCTCTTCATAATTTTACACCTCCGCC
TAACATTCTTTCTTATTTTGAGTTTTCCTCCCCAATCATTCTCTCCCTTT
CTTTACTTATATATN
TTTTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGCCCTAGCTAA
CAAAAATCCAAACAAAAACATTTAAATTCCAATTGAATATTACATTATAT
TCTGATATATTATCTTGTATAATAAGTTGAAAAGTTTATAATGAGCTATT
GTTAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATG
TGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGTGAATACATATAT
ATATAAATAGATAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
AGAGTGTGGGTGAGTGAGTGTGTGTGTGTGTATATATATATATATATATA
TATATGTGTGGGTGGGTGGGTTTTACGTGTATATTTATTTTATAAGAGAT
TTTTAGTTTTTTATANATATTTATATTTTGTNTTTTATTTTTTTTTTTTT
GGTNGTTTTTTGATTAGTAGGATGATTGGTTTTTGGGTTTTTTTTTTGTG
TTTTTGGAATATTTGGGTTTTTTTTTTTTTTTGGGGTTGAGTATGTTTTT
GTAGATTGTTAGAGTAGTTTATTTGTGTGTTTTGGGAGGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_j09.g1 MSMg01no375_j09.g1 CHROMAT_FILE:
MSMg01no375_j09.g1 PHD_FILE: MSMg01no375_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:13 2005
         (278 letters)



>mm_chr12_57808451_57809128
          Length = 678

 Score =  311 bits (161), Expect = 2e-89
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacagccctagctaacaaaaatccaaacaaaaacatttaaattccaattgaatatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacagccctagctaacaaaaatccaaacaaaaacatttaaattccaattgaatatta 260

                                                                       
Query: 61  cattatattctgatatattatcttgtataataagttgaaaagtttataatgagctattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatattctgatatattatcttgtataataagttgaaaagtttataatgagctattgt 320

                                                    
Query: 121 tagttctctctctctctctctctctctctctctctctctct 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttctctctctctctctctctctctctctctctctctct 361



 Score =  110 bits (57), Expect = 7e-29
 Identities = 57/57 (100%)
 Strand = Plus / Minus

                                                                    
Query: 222 agagagagagagagagagagagagagagagagagagagagagagagagagagagaga 278
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagagagagagagagagagagagagagagagagagagagaga 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 49
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 10
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)