BAC Information

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BAC

Clone NameMSMg01-375N10
Chromosome12 (Build37)
Map Location 33,068,165 - 33,068,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
Downstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375N10.T7 (MSMg01no375_n10.b1)MSMg01-375N10.TJ (MSMg01no375_n10.g1)
ACCAG481297AG481298
length787779
length of high quality
(start - end)
464 (52 - 515)341 (85 - 425)
definitionCHROMAT_FILE: MSMg01no375_n10.b1 PHD_FILE: MSMg01no375_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:33 2005CHROMAT_FILE: MSMg01no375_n10.g1 PHD_FILE: MSMg01no375_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAAATTCCTAGGCAAATGGATGGATCCGGAGGATATC
ATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTC
ACTGATAAATGGATATTAGCCCAGAAACTCAGAATACCCAAGATACAATT
TGCAAGACACATGAAACTCAAGAAGAAGGAAGACAAAAGTGTGGATACTT
CGTTCCTTCTTAGAACTGGGAACAAAATACCCATGGAAGGAGTTACAGGG
ACAAAGTTCAGAGCAGAGACTGAAGGAATGACCATCCAGAAAATGCCCCA
CCTGGGGATCTATCCCATAAACAGCCACCAAACCCAGACACTATTGCAGA
TGTCAACAAGGGCTTGCTGAAAGGACTCTGATATAGCTGTCTCTTGCGAG
GCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTAT
TGATGGAGCACAGGGTCCCCAATGAAGGAGATAGAGAAAGTACCCAAGGA
GTTGAAAGGGTCTGCAGCCCCATAGGAGGAGCAACAATATGAACTATCCT
GTACCCCCCCAAGTTCCCTGAAATAAAACCCCCAATCAAATAAAACAACC
TGGGGGGACTCCTTGTCTCTTGGTTGCCTATTGTCAAAAAAGACCGGCCT
ATCCGGTCTCTCTCCCGCGAAGAAAGAGTCCCCTTCCTTTTTTATATAAA
TACTCTCCGTCCTCCTATTATTGAATTTATCCAGCCG
TTTTTCTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTGCAGTCTATAG
GACTGGAATGATCAGCAACCTGCAACAAGGGCAGATTTACATCCTGTGTA
GACTGCATTACCTCATTCCCAAATGCCTATCACTAGGTGGAGGGAGCAAA
GGGGATGGGATGGGCCTGGGAGAGAATTGCCATATCCAATTTCATGTCCG
TCAAGCACAGGGACTCTAGGTAAGTAAGCTTTGTGCCTTGGCATCCTCCA
GAATCAAATGTGCTTCATAAGCTAGTGGAATACTGTAAGGGTTGAAAAGA
ACATTAATTCTGGAGACATGGGAAGTGCTTAATAAACGCTATTAATTGGA
AGTATGAAGGCTGAGTACAGTATAGAGCAATGAGAATTTATCTCTCCAGT
TTGTTCGGCATGGTCACCAAAAGCAGATTATAGTCTGTATAGTTAAAAGA
TAATTAACGGCAAGTAATTAATGGTCCAAATAAAATTGACCCCTTCTTAC
TCTTTTATGCCTCCCCGAAATTACTATGACTATTAGCTGATCTTGTTACA
TATCTCACCTGTTTCTCTTTTCCCCTTATATTATTTTTTTTGCCCCCCCT
TTATCCTTTTCCTGGTTTACTTATTCTCTTTTCCCTTTTTGCCATCCTAG
CATTATTATTCTCCTATCTTTATCATTTATCCTATCTTATCTACCACCTC
CTCTCTCCTTTCATAACTTTATTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_n10.g1 MSMg01no375_n10.g1 CHROMAT_FILE:
MSMg01no375_n10.g1 PHD_FILE: MSMg01no375_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:33 2005
         (341 letters)



>mm_chr12_33067965_33068698
          Length = 734

 Score =  578 bits (299), Expect = e-169
 Identities = 328/341 (96%), Gaps = 7/341 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactgcagtctataggactggaatgatcagcaacctgcaacaagggcagatttacatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactgcagtctataggactggaatgatcagcaacctgcaacaagggcagatttacatcc 260

                                                                       
Query: 61  tgtgtagactgcattacctcattcccaaatgcctatcactaggtggagggagcaaagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtagactgcattacctcattcccaaatgcctatcactaggtggagggagcaaagggg 320

                                                                       
Query: 121 atgggatgggcctgggagagaattgccatatccaatttcatgtccgtcaagcacagggac 180
           |||||     ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 321 atggg-----cctgggagagaattgccatatccaatttcatgtccatcaagcactgggac 375

                                                                       
Query: 181 tctaggtaagtaagctttgtgccttggcatcctccagaatcaaatgtgcttcataagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 376 tctaggtaagtaagctttgtgccttggcatcctccagaatcaaatgtgcttaataaggta 435

                                                                       
Query: 241 gtggaatactgtaagggttgaaaagaacattaattctggagacatgggaagtgcttaata 300
           |||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||
Sbjct: 436 gtggaatactgtaaaggttgaaaagaacat--attctggagacatgggaagtacttaata 493

                                                    
Query: 301 aacgctattaattggaagtatgaaggctgagtacagtatag 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aacgctattaattggaagtatgaaggctgagtacagtatag 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 734
Length adjustment: 9
Effective length of query: 332
Effective length of database: 725
Effective search space:   240700
Effective search space used:   240700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)