Query= MSMg01no375_n16.b1 MSMg01no375_n16.b1 CHROMAT_FILE:
MSMg01no375_n16.b1 PHD_FILE: MSMg01no375_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
(478 letters)
>mm_chr12_108790620_108791497
Length = 878
Score = 901 bits (466), Expect = 0.0
Identities = 472/474 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcgtgtcttcagttcgcccttgtattctggagtacagccatgaagttcatcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattcttcgtgtcttcagttcgcccttgtattctggagtacagccatgaagttcatcac 619
Query: 65 tctcaaaacagacaccatgtaaccagtcagacccttggtgcattaagccatgtgctcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctcaaaacagacaccatgtaaccagtcagacccttggtgcattaagccatgtgctcctt 559
Query: 125 ggagtggaggaggcacactcaggtcaccctgtcccctgtccccacaataacacacagcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggagtggaggaggcacactcaggtcaccctgtcccctgtccccacaataacacacagcct 499
Query: 185 ctgttgctccatgtgtctctgagctttttttgcgtaggttggtttcaggttagagttgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgttgctccatgtgtctctgagctttttttgcgtaggttggtttcaggttagagttgtt 439
Query: 245 tttccacagctggggatggtggatggggttaacctctgctggactgtggttcagcctgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttccacagctggggatggtggatggggttaacctctgctggactgtggttcagcctgtg 379
Query: 305 acatacagaaggtttaatgagctgagcatatgaggtatggtgaactccttagactgcagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acatacagaaggtttaatgagctgagcatatgaggtatggtgaactccttagactgcagc 319
Query: 365 tctatgctggctgtggtctagggagcacctctctgggggagcacctctccagtccagggt 424
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 318 tctatgctggctgtggtctggggagcacctctctgggggagcacctctccagcccagggt 259
Query: 425 tctttctgtgtgtttctcatgccacacaagaagccagcttgatgctgtactctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctttctgtgtgtttctcatgccacacaagaagccagcttgatgctgtactctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_n16.g1 MSMg01no375_n16.g1 CHROMAT_FILE:
MSMg01no375_n16.g1 PHD_FILE: MSMg01no375_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:35 2005
(471 letters)
>mm_chr12_108742627_108743495
Length = 869
Score = 824 bits (426), Expect = 0.0
Identities = 460/472 (97%), Gaps = 3/472 (0%)
Strand = Plus / Plus
Query: 1 aaaaaactattctcctacatagttcattggttaaagcaaaacttaaaatagaaaatagaa 60
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 201 aaaaaattattctcctacatagttcactggttaaaacaaaacttaaaatagaaaatagaa 260
Query: 61 acaatatacctatatatgggtaaaatgtaaggacatgtaacaaatccttagacatatatc 120
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct: 261 acaatatacctatatatgggtaaaatataaggac--gtaacaaatccttagacatatgtc 318
Query: 121 caaagagacaaatggaaaaaatatcaagctataataacatgtattagaaactataggtta 180
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 319 caaagagttaaatggaaaaaatatcaagctataacaacatgtattagaaactataggtta 378
Query: 181 gaaaaagatgtacattttatcttaaaatgttaacataaaataagttattaagttagaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaaaagatgtacattttatcttaaaatgttaacataaaataagttattaagttagaaga 438
Query: 241 taaaagtaattaatttaaggcagaaatatcttacataagaagcaaagaaaagcaggtata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaaagtaattaatttaaggcagaaatatcttacataagaagcaaagaaaagcaggtata 498
Query: 301 accaacagaacccagagcagttatatgaaaagattaataaaataaccaaatggcttgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 accaacagaacccagagcagttatatgaaaagattaataaaataaccaaatggcttgtca 558
Query: 361 agaaatagaaaa-aaaaaggaaccaaaataggtctgggaacggagatgatgcacagtcat 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 559 agaaatagaaaagaaaaaggaaccaaaataggtctgggaacggagatgatgcatagtcat 618
Query: 420 agaatcgaaggacagcttcaagtgacattatgtgctattgacagtaagcttg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agaatcgaaggacagcttcaagtgacattatgtgctattgacagtaagcttg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 869
Length adjustment: 10
Effective length of query: 461
Effective length of database: 859
Effective search space: 395999
Effective search space used: 395999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
