Query= MSMg01no376_d10.b1 MSMg01no376_d10.b1 CHROMAT_FILE:
MSMg01no376_d10.b1 PHD_FILE: MSMg01no376_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:03 2005
(514 letters)
>mm_chr12_120307824_120308737
Length = 914
Score = 986 bits (510), Expect = 0.0
Identities = 510/510 (100%)
Strand = Plus / Plus
Query: 5 gaattctatgacccttctgactttgactagtcactgagcatcatcacctgtctatctttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgacccttctgactttgactagtcactgagcatcatcacctgtctatctttg 264
Query: 65 tttgctgttgttacaggaagctcaggtgtcctggactgggcagaaacaatacgtaagaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgctgttgttacaggaagctcaggtgtcctggactgggcagaaacaatacgtaagaat 324
Query: 125 agaaacagaaacaaaataaaactcctcctggtcaagagaatagaatctttggcctgagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaacagaaacaaaataaaactcctcctggtcaagagaatagaatctttggcctgagtg 384
Query: 185 aagatgtaccattcagctagacaaggtcaacctcctggccaagggactaccctagaatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagatgtaccattcagctagacaaggtcaacctcctggccaagggactaccctagaatgg 444
Query: 245 cagcttcaccttaaacatgctcaggagataggaagaatagttttccctttaataagatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagcttcaccttaaacatgctcaggagataggaagaatagttttccctttaataagatac 504
Query: 305 tgtactcttcccagagtctcgccctaatgctgtagtttgcagaccgcagccacacagctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtactcttcccagagtctcgccctaatgctgtagtttgcagaccgcagccacacagctt 564
Query: 365 cataagtcaccataatttcctgaattattcagaaaagcatagcttctcctttttgacttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cataagtcaccataatttcctgaattattcagaaaagcatagcttctcctttttgacttt 624
Query: 425 ctctctcctttaagcatacttatccctcaacattctggattaccagcatttcaggcttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctctcctttaagcatacttatccctcaacattctggattaccagcatttcaggcttcc 684
Query: 485 ttcttctttctccagagcttctctccctgc 514
||||||||||||||||||||||||||||||
Sbjct: 685 ttcttctttctccagagcttctctccctgc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_d10.g1 MSMg01no376_d10.g1 CHROMAT_FILE:
MSMg01no376_d10.g1 PHD_FILE: MSMg01no376_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:03 2005
(540 letters)
>mm_chr12_120472928_120473867
Length = 940
Score = 862 bits (446), Expect = 0.0
Identities = 493/530 (93%), Gaps = 33/530 (6%)
Strand = Plus / Minus
Query: 1 actgatgtggctagtcttgttagccagattgtttctgaggattctgttcccatttcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 actgatgtggctagtcttgttagccagattgtttctgaggattctgttcccatttcccaa 471
Query: 61 gtctagaattataagcaattaacatgccaactggacatctatatgtgggcttctggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtctagaattataagcaattaacatgccaactggacatctatatgtgggcttctggagat 411
Query: 121 ctagctatgcaagcatgttaaccactgagccatctcactagcctccaaaattctttagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctagctatgcaagcatgttaaccactgagccatctcactagcctccaaaattctttagct 351
Query: 181 agtcttctatgtcactttcatacaatgtgcatgtagtaattctgtctttaggtgacaaag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 350 agtcttctatgtcactttcatacaatgtgtatgtagtaattctgtctttaggtgacaaag 291
Query: 241 acactttggggtctgtttaaaagtcatccatgcttgccttacatgtgaaaacaagtagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acactttggggtctgtttaaaagtcatccatgcttgccttacatgtgaaaacaagtagct 231
Query: 301 gatatgatttcaaaaatgtccttctactg------------------------------- 329
|||||||||||||||||||||||||||||
Sbjct: 230 gatatgatttcaaaaatgtccttctactgtaagtgctttgaaagagtttcaagcttattt 171
Query: 330 --tctcaccacactgagagcttgtggaaagctttatttaccatgtggaggttctgctcaa 387
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 catctcacaatactgagagcttgtggaaagctttatttaccatgtggaggttctgctcaa 111
Query: 388 ctcagatttggtgactgattgtcaaatctgttatctaatccttagttatcacctactaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 110 ctcagatttggtgactgattgtcaaatctgttatctaatccttagttatcatctactaga 51
Query: 448 cctttcatcaattaggaagttggtactggccacccaacagttagctttta 497
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 cctttcatcaattaggaagttggtactggccacccaacagttagctttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
