BAC Information

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BAC

Clone NameMSMg01-376J09
Chromosome12 (Build37)
Map Location 6,478,722 - 6,479,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC100042118, LOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376J09.T7 (MSMg01no376_j09.b1)MSMg01-376J09.TJ (MSMg01no376_j09.g1)
ACCAG481868AG481869
length689757
length of high quality
(start - end)
133 (78 - 210)438 (74 - 511)
definitionCHROMAT_FILE: MSMg01no376_j09.b1 PHD_FILE: MSMg01no376_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:31 2005CHROMAT_FILE: MSMg01no376_j09.g1 PHD_FILE: MSMg01no376_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTATCTNNNNNNNNNNNTTANNNNNNNNTTCTATXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAAGCCTTCAG
AAGAACTTCTGGAAATTCTAAGGCCACAGTAAAAGACTGCATATTTTATT
TATTGAGGAGTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTG
TGTGTGTGNCNNNCCNCNNNNCNNCCNNCCNCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTT
CCCCCCCCCTCCTCTTCTCCTCCCTTCCTTTTTTTCCCCCCCCCCTCTTT
CTCCCCTTTTTCTTTCCCCCCTTTCTCTCCTTTCTCCCCCTCTTCTCCTT
CTCTCCTTCCTCCTTTCTCTTCCCTCCTCCCCTTCTCCCTTTTTCCCCCC
TTTCTCCTTTTCCCCTTCTTTTTCCCCTCTTCCCCCCCCCTTTTTTCCCC
CTTTTCTCCCCCCCCCCTTTCTTCCCTCTCTTTCTTCTTCCCTTTTTTTC
CCTCTCTTCTCCCCTTTTCCTTCTTTTCTCCTTCTTCCTNTTTTTCTCCC
TTTTCCCTCTCTTCTCTCCCTTTTTCTTTCTCCTCTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTACTTCTCTTTTCTCAGTATCTCTG
TCTCTATCTTTCTTTCTGTATGTCTGTCTGTTAGTCTCACCCCCCCCCCC
GCGCGTGAGTGTGTATGTGTNGTGTGTGTGGGGGGGTGTAAATCTCCATT
CTACATAAAGNATTTAGTATTGCTTTAGTGTTGCACATGTACACATACAT
GTATTTGGGAAAACCACGTGGAATTGGCTATCAGACAATATTAATTTCCA
TTACTACCAAAGAACAGTCATGTACATTTCTATTCATTTTCTACTAGCTA
GTGTCTATTCTTACAAACAACAGAAGAGCCTACATAGTAGTAACAGTGGT
GAATAACAAATGAAACAAGGTAATTTACAAGTCGACAGAGTTGAGTGGTT
CCCTTGGCAGTGCTGCTGTTTCTCATGGCATTGGAAGGACTTAAACTTTA
TGTTCTGGATTAGCTTTCTTCACAGTCTGAATTTCTAAATGAGTATCTAG
GTAAAAACCTAACCTTCAAACAAAAAAAAAAAAAAGCCTATGGTCTGAAA
AAGGAATTGGTACATTTTGATTCTATGAACCCCTAATTAAAAAATTTGAA
AAAAAATGATAATTAAAATATCCCATAAAGGCACTTTCAACAAAAAAATT
CCTTAATATGGCTCCCTTGGGCCATAAGGGTAAAGAAAAATTAAAAATTA
TTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_j09.g1 MSMg01no376_j09.g1 CHROMAT_FILE:
MSMg01no376_j09.g1 PHD_FILE: MSMg01no376_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:31 2005
         (438 letters)



>mm_chr12_6478437_6479276
          Length = 840

 Score =  731 bits (378), Expect = 0.0
 Identities = 427/453 (94%), Gaps = 20/453 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacttctcttttctcagtatctctgtctctatctttctttctgtatgtctgtctgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tctacttctcttttctcagtatctctgtctctatctttctttctgtatgtctgtctgtta 674

                                                                       
Query: 61  gtctcacccccccccccgcgcgtgagtgtgta----tgtgtngtgtgtgtg--------- 107
           || || ||||||||| |||||  |||||||||    ||||| |||||||||         
Sbjct: 673 gt-tc-ccccccccctcgcgc--gagtgtgtatgtctgtgt-gtgtgtgtgcgtgtgtgt 619

                                                                       
Query: 108 --ggggggtgtaaatctccattctacataaagnatttagtattgctttagtgttgcacat 165
             | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 gtgtgtggtgtaaatctccattctacataaagcatttagtattgctttagtgttgcacat 559

                                                                       
Query: 166 gtacacatacatgtatttgggaaaaccacgtggaattggctatcagacaatattaatttc 225
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 558 gtacacatacatgtatttgggaaaaccatgtggaattggctatcagacaatattaatttc 499

                                                                       
Query: 226 cattactaccaaagaacagtcatgtacatttctattcattttctactagctagtgtctat 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cattactaccaaagaacagtcatgtacatttctattcattttctactagctagtgtctat 439

                                                                       
Query: 286 tcttacaaacaacagaagagcctacatagtagtaacagtggtgaataacaaatgaaacaa 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcttacaaacaacagaagagcctacatagtagtaacagtggtgaataacaaatgaaacaa 379

                                                                       
Query: 346 ggtaatttacaagtcgacagagttgagtggttcccttggcagtgctgctgtttctcatgg 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtaatttacaagtcgacagagttgagtggttcccttggcagtgctgctgtttctcatgg 319

                                            
Query: 406 cattggaaggacttaaactttatgttctggatt 438
           ||||||||||||||| |||||||||||||||||
Sbjct: 318 cattggaaggacttagactttatgttctggatt 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 840
Length adjustment: 9
Effective length of query: 429
Effective length of database: 831
Effective search space:   356499
Effective search space used:   356499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)